Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y7C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Y7C entry

There are 5 chains in PDB entry 2Y7C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 464
B
 MET 1GLU 529
C
 MET 1GLU 529
D
 MET 1TYR 107
E
 MET 1GLU 106
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 86 helices in PDB entry 2Y7C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 19Right-handed alpha
Helix 2
2
A
32 37Right-handed alpha
Helix 3
3
A
45 51Right-handed alpha
Helix 4
4
A
62 68Right-handed alpha
Helix 5
5
A
118 128Right-handed alpha
Helix 6
6
A
128 137Right-handed alpha
Helix 7
7
A
148 155Right-handed alpha
Helix 8
8
A
161 204Right-handed alpha
Helix 9
9
A
226 229Right-handed alpha
Helix 10
10
A
242 247Right-handed alpha
Helix 11
11
A
254 261Right-handed alpha
Helix 12
12
A
271 279Right-handed alpha
Helix 13
13
A
330 340Right-handed alpha
Helix 14
14
A
340 351Right-handed alpha
Helix 15
15
A
361 368Right-handed alpha
Helix 16
16
A
374 418Right-handed alpha
Helix 17
17
A
419 424Right-handed alpha
Helix 18
18
A
431 436Right-handed alpha
Helix 19
19
A
436 457Right-handed alpha
Helix 20
20
A
458 464Right-handed alpha
Helix 21
21
B
4 19Right-handed alpha
Helix 22
22
B
26 44Right-handed alpha
Helix 23
23
B
45 50Right-handed alpha
Helix 24
24
B
55 61Right-handed alpha
Helix 25
25
B
64 79Right-handed alpha
Helix 26
26
B
83 91Right-handed alpha
Helix 27
27
B
99 112Right-handed alpha
Helix 28
28
B
123 141Right-handed alpha
Helix 29
29
B
145 150Right-handed 310
Helix 30
30
B
152 164Right-handed alpha
Helix 31
31
B
179 191Right-handed alpha
Helix 32
32
B
200 210Right-handed alpha
Helix 33
33
B
218 231Right-handed alpha
Helix 34
34
B
238 241Right-handed 310
Helix 35
35
B
251 256Right-handed alpha
Helix 36
36
B
288 299Right-handed alpha
Helix 37
37
B
312 317Right-handed alpha
Helix 38
38
B
320 331Right-handed alpha
Helix 39
39
B
394 397Right-handed 310
Helix 40
40
B
398 406Right-handed alpha
Helix 41
41
B
432 436Right-handed 310
Helix 42
42
B
441 445Right-handed 310
Helix 43
43
B
452 458Right-handed alpha
Helix 44
44
B
480 486Right-handed alpha
Helix 45
45
B
486 508Right-handed alpha
Helix 46
46
B
512 529Right-handed alpha
Helix 47
47
C
4 19Right-handed alpha
Helix 48
48
C
26 44Right-handed alpha
Helix 49
49
C
45 50Right-handed alpha
Helix 50
50
C
55 61Right-handed alpha
Helix 51
51
C
64 79Right-handed alpha
Helix 52
52
C
83 91Right-handed alpha
Helix 53
53
C
99 112Right-handed alpha
Helix 54
54
C
123 141Right-handed alpha
Helix 55
55
C
145 150Right-handed 310
Helix 56
56
C
152 164Right-handed alpha
Helix 57
57
C
179 191Right-handed alpha
Helix 58
58
C
200 210Right-handed alpha
Helix 59
59
C
218 231Right-handed alpha
Helix 60
60
C
238 241Right-handed 310
Helix 61
61
C
251 256Right-handed alpha
Helix 62
62
C
288 299Right-handed alpha
Helix 63
63
C
312 317Right-handed alpha
Helix 64
64
C
319 331Right-handed alpha
Helix 65
65
C
394 397Right-handed 310
Helix 66
66
C
398 406Right-handed alpha
Helix 67
67
C
432 436Right-handed 310
Helix 68
68
C
441 445Right-handed 310
Helix 69
69
C
452 458Right-handed alpha
Helix 70
70
C
480 486Right-handed alpha
Helix 71
71
C
486 508Right-handed alpha
Helix 72
72
C
512 529Right-handed alpha
Helix 73
73
D
2 21Right-handed alpha
Helix 74
74
D
25 28Right-handed 310
Helix 75
75
D
29 41Right-handed alpha
Helix 76
76
D
44 53Right-handed alpha
Helix 77
77
D
63 67Right-handed 310
Helix 78
78
D
72 92Right-handed alpha
Helix 79
79
D
92 102Right-handed alpha
Helix 80
80
E
2 21Right-handed alpha
Helix 81
81
E
25 28Right-handed 310
Helix 82
82
E
29 41Right-handed alpha
Helix 83
83
E
44 53Right-handed alpha
Helix 84
84
E
63 67Right-handed 310
Helix 85
85
E
72 92Right-handed alpha
Helix 86
86
E
92 102Right-handed alpha
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There are 9 sheets in PDB entry 2Y7C. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, BA, CA,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 14first strand
Strand 2
A
156 159anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
107 111anti-parallel
Strand 3
A
79 82anti-parallel
Strand 4
A
92 95anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 43first strand
Strand 2
A
59 60anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 210first strand
Strand 2
A
217 218anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 225first strand
Strand 2
A
369 372anti-parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 233first strand
Strand 2
A
320 325anti-parallel
Strand 3
A
288 291anti-parallel
Strand 4
A
303 305anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 283first strand
Strand 2
A
314 315anti-parallel
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There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
244 246first strand
Strand 2
B
212 216parallel
Strand 3
B
171 173parallel
Strand 4
B
260 265parallel
Strand 5
B
300 311parallel
Strand 6
B
352 359anti-parallel
Strand 7
B
332 339anti-parallel
Strand 8
B
374 379parallel
Strand 9
B
447 451anti-parallel
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There are 9 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
244 246first strand
Strand 2
C
212 216parallel
Strand 3
C
171 173parallel
Strand 4
C
260 265parallel
Strand 5
C
300 311parallel
Strand 6
C
352 359anti-parallel
Strand 7
C
332 339anti-parallel
Strand 8
C
374 379parallel
Strand 9
C
447 451anti-parallel
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