Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y7J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Y7J entry

There are 4 chains in PDB entry 2Y7J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 10ARG 293
B
 GLU 10ARG 293
C
 GLU 10ARG 293
D
 GLU 10ARG 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 2Y7J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 23Right-handed alpha
Helix 2
2
A
63 85Right-handed alpha
Helix 3
3
A
114 123Right-handed alpha
Helix 4
4
A
126 147Right-handed alpha
Helix 5
5
A
155 157Right-handed 310
Helix 6
6
A
190 194Right-handed 310
Helix 7
7
A
195 202Right-handed alpha
Helix 8
8
A
213 229Right-handed alpha
Helix 9
9
A
237 248Right-handed alpha
Helix 10
10
A
253 258Right-handed alpha
Helix 11
11
A
261 272Right-handed alpha
Helix 12
12
A
281 288Right-handed alpha
Helix 13
13
A
289 292Right-handed 310
Helix 14
14
B
12 23Right-handed alpha
Helix 15
15
B
63 85Right-handed alpha
Helix 16
16
B
115 123Right-handed alpha
Helix 17
17
B
126 147Right-handed alpha
Helix 18
18
B
155 157Right-handed 310
Helix 19
19
B
190 194Right-handed 310
Helix 20
20
B
195 204Right-handed alpha
Helix 21
21
B
212 229Right-handed alpha
Helix 22
22
B
237 248Right-handed alpha
Helix 23
23
B
253 258Right-handed alpha
Helix 24
24
B
261 272Right-handed alpha
Helix 25
25
B
281 287Right-handed alpha
Helix 26
26
B
288 292Right-handed 310
Helix 27
27
C
12 23Right-handed alpha
Helix 28
28
C
63 85Right-handed alpha
Helix 29
29
C
115 123Right-handed alpha
Helix 30
30
C
126 147Right-handed alpha
Helix 31
31
C
155 157Right-handed 310
Helix 32
32
C
190 194Right-handed 310
Helix 33
33
C
195 204Right-handed alpha
Helix 34
34
C
212 229Right-handed alpha
Helix 35
35
C
237 247Right-handed alpha
Helix 36
36
C
253 258Right-handed alpha
Helix 37
37
C
261 272Right-handed alpha
Helix 38
38
C
281 287Right-handed alpha
Helix 39
39
C
288 292Right-handed 310
Helix 40
40
D
12 23Right-handed alpha
Helix 41
41
D
63 85Right-handed alpha
Helix 42
42
D
115 123Right-handed alpha
Helix 43
43
D
126 147Right-handed alpha
Helix 44
44
D
155 157Right-handed 310
Helix 45
45
D
190 194Right-handed 310
Helix 46
46
D
195 204Right-handed alpha
Helix 47
47
D
213 229Right-handed alpha
Helix 48
48
D
237 248Right-handed alpha
Helix 49
49
D
253 258Right-handed alpha
Helix 50
50
D
261 272Right-handed alpha
Helix 51
51
D
281 287Right-handed alpha
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There are 12 sheets in PDB entry 2Y7J. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC, A, DB, C,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 32first strand
Strand 2
A
36 43anti-parallel
Strand 3
A
49 56anti-parallel
Strand 4
A
102 107anti-parallel
Strand 5
A
93 98anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 150first strand
Strand 2
A
176 177anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 161first strand
Strand 2
A
167 169anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 32first strand
Strand 2
B
36 43anti-parallel
Strand 3
B
49 56anti-parallel
Strand 4
B
102 107anti-parallel
Strand 5
B
93 98anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 114first strand
Strand 2
B
159 161anti-parallel
Strand 3
B
167 169anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 150first strand
Strand 2
B
176 177anti-parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
24 32first strand
Strand 2
C
36 43anti-parallel
Strand 3
C
49 56anti-parallel
Strand 4
C
102 107anti-parallel
Strand 5
C
93 98anti-parallel
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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
113 114first strand
Strand 2
C
159 161anti-parallel
Strand 3
C
167 169anti-parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
149 150first strand
Strand 2
C
176 177anti-parallel
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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
24 32first strand
Strand 2
D
36 43anti-parallel
Strand 3
D
49 56anti-parallel
Strand 4
D
102 108anti-parallel
Strand 5
D
93 98anti-parallel
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There are 3 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
113 114first strand
Strand 2
D
159 161anti-parallel
Strand 3
D
167 169anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
149 150first strand
Strand 2
D
176 177anti-parallel
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