Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y7L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Y7L entry

There are 2 chains in PDB entry 2Y7L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 0VAL 311
B
 ALA 12VAL 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 2Y7L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
124 131Right-handed alpha
Helix 2
2
A
174 177Right-handed 310
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There are 8 sheets in PDB entry 2Y7L. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 15first strand
Strand 2
A
31 40anti-parallel
Strand 3
A
106 117anti-parallel
Strand 4
A
303 309parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 15first strand
Strand 2
A
31 40anti-parallel
Strand 3
A
106 117anti-parallel
Strand 4
A
57 60anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 309first strand
Strand 2
A
106 117parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 55first strand
Strand 2
A
90 97anti-parallel
Strand 3
A
74 82anti-parallel
Strand 4
A
66 71anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 145first strand
Strand 2
A
148 156anti-parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 173first strand
Strand 2
A
178 184anti-parallel
Strand 3
A
254 264anti-parallel
Strand 4
A
205 218anti-parallel
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There are 6 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 238first strand
Strand 2
A
242 247anti-parallel
Strand 3
A
192 201anti-parallel
Strand 4
A
269 274anti-parallel
Strand 5
A
290 295anti-parallel
Strand 6
B
13 16parallel
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There are 5 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 238first strand
Strand 2
A
242 247anti-parallel
Strand 3
A
192 201anti-parallel
Strand 4
A
277 280anti-parallel
Strand 5
A
285 287anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il