Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y84

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2Y84 entry

There are 8 chains in PDB entry 2Y84 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 88	GLU 300
B	SER 89	ALA 301
C	SER 89	ALA 301
D	SER 89	GLU 300
E	SER 89	GLU 300
F	ASP 88	ALA 301
G	SER 89	ALA 301
H	PHE 90	GLU 300

There are 72 helices in PDB entry 2Y84. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	104	123	Right-handed alpha
Helix 2	2	A	137	145	Right-handed alpha
Helix 3	3	A	187	192	Right-handed alpha
Helix 4	4	A	204	207	Right-handed 310
Helix 5	5	A	208	215	Right-handed alpha
Helix 6	6	A	231	238	Right-handed alpha
Helix 7	7	A	247	252	Right-handed alpha
Helix 8	8	A	280	282	Right-handed 310
Helix 9	9	A	284	299	Right-handed alpha
Helix 10	10	B	104	123	Right-handed alpha
Helix 11	11	B	137	144	Right-handed alpha
Helix 12	12	B	187	194	Right-handed alpha
Helix 13	13	B	204	207	Right-handed 310
Helix 14	14	B	208	216	Right-handed alpha
Helix 15	15	B	231	238	Right-handed alpha
Helix 16	16	B	247	252	Right-handed alpha
Helix 17	17	B	253	258	Right-handed alpha
Helix 18	18	B	280	282	Right-handed 310
Helix 19	19	B	284	299	Right-handed alpha
Helix 20	20	C	104	120	Right-handed alpha
Helix 21	21	C	137	144	Right-handed alpha
Helix 22	22	C	187	194	Right-handed alpha
Helix 23	23	C	204	207	Right-handed 310
Helix 24	24	C	208	213	Right-handed alpha
Helix 25	25	C	214	217	Right-handed 310
Helix 26	26	C	231	238	Right-handed alpha
Helix 27	27	C	247	251	Right-handed alpha
Helix 28	28	C	280	282	Right-handed 310
Helix 29	29	C	284	299	Right-handed alpha
Helix 30	30	D	104	123	Right-handed alpha
Helix 31	31	D	137	145	Right-handed alpha
Helix 32	32	D	187	194	Right-handed alpha
Helix 33	33	D	204	207	Right-handed 310
Helix 34	34	D	208	216	Right-handed alpha
Helix 35	35	D	231	238	Right-handed alpha
Helix 36	36	D	247	252	Right-handed alpha
Helix 37	37	D	280	282	Right-handed 310
Helix 38	38	D	284	299	Right-handed alpha
Helix 39	39	E	104	123	Right-handed alpha
Helix 40	40	E	132	136	Right-handed 310
Helix 41	41	E	137	145	Right-handed alpha
Helix 42	42	E	187	194	Right-handed alpha
Helix 43	43	E	208	216	Right-handed alpha
Helix 44	44	E	231	239	Right-handed alpha
Helix 45	45	E	247	254	Right-handed alpha
Helix 46	46	E	280	282	Right-handed 310
Helix 47	47	E	284	299	Right-handed alpha
Helix 48	48	F	104	123	Right-handed alpha
Helix 49	49	F	137	145	Right-handed alpha
Helix 50	50	F	187	194	Right-handed alpha
Helix 51	51	F	204	207	Right-handed 310
Helix 52	52	F	208	215	Right-handed alpha
Helix 53	53	F	231	239	Right-handed alpha
Helix 54	54	F	247	251	Right-handed alpha
Helix 55	55	F	280	282	Right-handed 310
Helix 56	56	F	284	299	Right-handed alpha
Helix 57	57	G	104	123	Right-handed alpha
Helix 58	58	G	137	145	Right-handed alpha
Helix 59	59	G	187	194	Right-handed alpha
Helix 60	60	G	208	216	Right-handed alpha
Helix 61	61	G	231	239	Right-handed alpha
Helix 62	62	G	247	254	Right-handed alpha
Helix 63	63	G	280	282	Right-handed 310
Helix 64	64	G	284	299	Right-handed alpha
Helix 65	65	H	104	123	Right-handed alpha
Helix 66	66	H	137	145	Right-handed alpha
Helix 67	67	H	187	194	Right-handed alpha
Helix 68	68	H	208	216	Right-handed alpha
Helix 69	69	H	231	239	Right-handed alpha
Helix 70	70	H	247	254	Right-handed alpha
Helix 71	71	H	280	282	Right-handed 310
Helix 72	72	H	284	299	Right-handed alpha

There are 16 sheets in PDB entry 2Y84. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC, A, EA, FA, FB, FC, GA, HA,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	169	first strand
Strand 2	A	271	278	anti-parallel
Strand 3	A	149	152	anti-parallel
Strand 4	A	98	102	parallel
Strand 5	A	127	131	parallel
Strand 6	E	221	226	parallel
Strand 7	E	195	199	parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	246	first strand
Strand 2	A	171	176	anti-parallel
Strand 3	A	259	263	anti-parallel

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There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	199	first strand
Strand 2	A	221	226	parallel
Strand 3	E	127	131	parallel
Strand 4	E	98	102	parallel
Strand 5	E	149	152	parallel
Strand 6	E	271	278	anti-parallel
Strand 7	E	161	169	anti-parallel

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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	169	first strand
Strand 2	B	271	278	anti-parallel
Strand 3	B	149	152	anti-parallel
Strand 4	B	98	102	parallel
Strand 5	B	127	131	parallel
Strand 6	D	221	226	parallel
Strand 7	D	195	199	parallel

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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	246	first strand
Strand 2	B	171	176	anti-parallel
Strand 3	B	259	263	anti-parallel

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There are 7 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	195	199	first strand
Strand 2	B	221	226	parallel
Strand 3	D	127	131	parallel
Strand 4	D	98	102	parallel
Strand 5	D	149	152	parallel
Strand 6	D	271	278	anti-parallel
Strand 7	D	161	169	anti-parallel

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There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	169	first strand
Strand 2	C	271	278	anti-parallel
Strand 3	C	149	152	anti-parallel
Strand 4	C	98	102	parallel
Strand 5	C	127	131	parallel
Strand 6	H	221	226	parallel
Strand 7	H	195	199	parallel

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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	243	246	first strand
Strand 2	C	171	176	anti-parallel
Strand 3	C	259	263	anti-parallel

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There are 7 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	195	199	first strand
Strand 2	C	221	226	parallel
Strand 3	H	127	131	parallel
Strand 4	H	98	103	parallel
Strand 5	H	149	152	parallel
Strand 6	H	271	278	anti-parallel
Strand 7	H	161	169	anti-parallel

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There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	243	246	first strand
Strand 2	D	171	176	anti-parallel
Strand 3	D	259	263	anti-parallel

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There are 3 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	243	246	first strand
Strand 2	E	171	176	anti-parallel
Strand 3	E	259	263	anti-parallel

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There are 7 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	161	169	first strand
Strand 2	F	271	278	anti-parallel
Strand 3	F	149	152	anti-parallel
Strand 4	F	98	102	parallel
Strand 5	F	127	131	parallel
Strand 6	G	221	226	parallel
Strand 7	G	195	199	parallel

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There are 3 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	243	246	first strand
Strand 2	F	171	176	anti-parallel
Strand 3	F	259	263	anti-parallel

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There are 7 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	195	199	first strand
Strand 2	F	221	226	parallel
Strand 3	G	127	131	parallel
Strand 4	G	98	102	parallel
Strand 5	G	149	152	parallel
Strand 6	G	271	278	anti-parallel
Strand 7	G	161	169	anti-parallel

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There are 3 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	243	246	first strand
Strand 2	G	171	176	anti-parallel
Strand 3	G	259	263	anti-parallel

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There are 3 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	243	246	first strand
Strand 2	H	171	176	anti-parallel
Strand 3	H	259	263	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2Y84

Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y84