Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y85


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Y85 entry

There are 4 chains in PDB entry 2Y85 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 2ARG 244
B
 MET 2ARG 244
C
 MET 2ARG 244
D
 MET 2ARG 244
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 2Y85. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 44Right-handed alpha
Helix 2
2
A
54 58Right-handed alpha
Helix 3
3
A
63 74Right-handed alpha
Helix 4
4
A
86 95Right-handed alpha
Helix 5
5
A
104 109Right-handed 310
Helix 6
6
A
110 122Right-handed alpha
Helix 7
7
A
151 162Right-handed alpha
Helix 8
8
A
182 192Right-handed alpha
Helix 9
9
A
205 214Right-handed alpha
Helix 10
10
A
226 231Right-handed alpha
Helix 11
11
A
235 243Right-handed alpha
Helix 12
12
B
33 45Right-handed alpha
Helix 13
13
B
54 58Right-handed alpha
Helix 14
14
B
63 74Right-handed alpha
Helix 15
15
B
86 95Right-handed alpha
Helix 16
16
B
104 109Right-handed 310
Helix 17
17
B
110 122Right-handed alpha
Helix 18
18
B
151 162Right-handed alpha
Helix 19
19
B
182 191Right-handed alpha
Helix 20
20
B
205 214Right-handed alpha
Helix 21
21
B
215 218Right-handed 310
Helix 22
22
B
226 231Right-handed alpha
Helix 23
23
B
235 243Right-handed alpha
Helix 24
24
C
33 44Right-handed alpha
Helix 25
25
C
54 58Right-handed alpha
Helix 26
26
C
63 74Right-handed alpha
Helix 27
27
C
86 95Right-handed alpha
Helix 28
28
C
104 109Right-handed 310
Helix 29
29
C
110 122Right-handed alpha
Helix 30
30
C
151 162Right-handed alpha
Helix 31
31
C
182 191Right-handed alpha
Helix 32
32
C
205 214Right-handed alpha
Helix 33
33
C
215 218Right-handed 310
Helix 34
34
C
226 231Right-handed alpha
Helix 35
35
C
235 243Right-handed alpha
Helix 36
36
D
33 44Right-handed alpha
Helix 37
37
D
54 58Right-handed alpha
Helix 38
38
D
63 74Right-handed alpha
Helix 39
39
D
86 96Right-handed alpha
Helix 40
40
D
104 109Right-handed 310
Helix 41
41
D
110 122Right-handed alpha
Helix 42
42
D
152 162Right-handed alpha
Helix 43
43
D
182 191Right-handed alpha
Helix 44
44
D
205 214Right-handed alpha
Helix 45
45
D
215 218Right-handed 310
Helix 46
46
D
226 231Right-handed alpha
Helix 47
47
D
235 243Right-handed alpha
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There are 7 sheets in PDB entry 2Y85. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
16 18parallel
Strand 3
A
5 13anti-parallel
Strand 4
A
220 225parallel
Strand 5
A
197 200parallel
Strand 6
A
167 171parallel
Strand 7
A
125 134parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
125 134parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 32first strand
Strand 2
B
16 19parallel
Strand 3
B
5 13anti-parallel
Strand 4
B
220 225parallel
Strand 5
B
197 200parallel
Strand 6
B
167 171parallel
Strand 7
B
125 134parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 32first strand
Strand 2
B
125 134parallel
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There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
31 32first strand
Strand 2
C
16 18parallel
Strand 3
C
5 13anti-parallel
Strand 4
C
220 225parallel
Strand 5
C
197 200parallel
Strand 6
C
167 171parallel
Strand 7
C
125 134parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
31 32first strand
Strand 2
C
125 134parallel
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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
31 32first strand
Strand 2
D
16 18parallel
Strand 3
D
5 13anti-parallel
Strand 4
D
148 151first strand
Strand 5
D
137 141anti-parallel
Strand 6
D
125 134anti-parallel
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