Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y8D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Y8D entry

There is 1 chain in PDB entry 2Y8D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2327CYS 2628
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2Y8D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2330 2345Right-handed alpha
Helix 2
2
A
2352 2356Right-handed 310
Helix 3
3
A
2378 2380Right-handed 310
Helix 4
4
A
2381 2388Right-handed alpha
Helix 5
5
A
2388 2411Right-handed alpha
Helix 6
6
A
2414 2435Right-handed alpha
Helix 7
7
A
2441 2451Right-handed alpha
Helix 8
8
A
2458 2484Right-handed alpha
Helix 9
9
A
2496 2501Right-handed 310
Helix 10
10
A
2502 2530Right-handed alpha
Helix 11
11
A
2542 2574Right-handed alpha
Helix 12
12
A
2583 2592Right-handed alpha
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There is 1 sheet ( AA) in PDB entry 2Y8D.

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2359 2361first strand
Strand 2
A
2364 2366anti-parallel
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