Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y8E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Y8E entry

There are 2 chains in PDB entry 2Y8E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 10PRO 174
B
 GLY 7LEU 173
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2Y8E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 35Right-handed alpha
Helix 2
2
A
71 77Right-handed 310
Helix 3
3
A
78 84Right-handed alpha
Helix 4
4
A
96 102Right-handed alpha
Helix 5
5
A
102 115Right-handed alpha
Helix 6
6
A
127 133Right-handed 310
Helix 7
7
A
136 148Right-handed alpha
Helix 8
8
A
161 172Right-handed alpha
Helix 9
9
B
24 35Right-handed alpha
Helix 10
10
B
71 77Right-handed 310
Helix 11
11
B
78 84Right-handed alpha
Helix 12
12
B
96 102Right-handed alpha
Helix 13
13
B
102 115Right-handed alpha
Helix 14
14
B
127 133Right-handed 310
Helix 15
15
B
136 148Right-handed alpha
Helix 16
16
B
161 173Right-handed alpha
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There is 1 sheet ( AA) in PDB entry 2Y8E.

There are 12 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 154first strand
Strand 2
A
119 125parallel
Strand 3
A
87 93parallel
Strand 4
A
11 19parallel
Strand 5
A
59 68parallel
Strand 6
A
47 56anti-parallel
Strand 7
B
47 56anti-parallel
Strand 8
B
59 68anti-parallel
Strand 9
B
12 19parallel
Strand 10
B
87 93parallel
Strand 11
B
119 125parallel
Strand 12
B
150 154parallel
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