Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y8F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Y8F entry

There are 4 chains in PDB entry 2Y8F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 322GLU 448
B
 GLU 330GLU 450
C
 GLU 330VAL 447
D
 GLY 317LYS 454
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 2Y8F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
425 445Right-handed alpha
Helix 2
2
B
425 450Right-handed alpha
Helix 3
3
C
425 445Right-handed alpha
Helix 4
4
D
321 326Right-handed alpha
Helix 5
5
D
425 454Right-handed alpha
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There are 4 sheets in PDB entry 2Y8F. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 390first strand
Strand 2
A
370 379anti-parallel
Strand 3
A
349 364anti-parallel
Strand 4
A
329 344anti-parallel
Strand 5
A
417 423anti-parallel
Strand 6
A
404 410anti-parallel
Strand 7
A
397 401anti-parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
385 390first strand
Strand 2
B
373 379anti-parallel
Strand 3
B
349 362anti-parallel
Strand 4
B
331 344anti-parallel
Strand 5
B
417 423anti-parallel
Strand 6
B
404 410anti-parallel
Strand 7
B
397 401anti-parallel
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There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
385 390first strand
Strand 2
C
372 379anti-parallel
Strand 3
C
349 363anti-parallel
Strand 4
C
331 344anti-parallel
Strand 5
C
417 423anti-parallel
Strand 6
C
404 410anti-parallel
Strand 7
C
397 401anti-parallel
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There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
385 390first strand
Strand 2
D
372 379anti-parallel
Strand 3
D
349 363anti-parallel
Strand 4
D
331 344anti-parallel
Strand 5
D
416 423anti-parallel
Strand 6
D
404 411anti-parallel
Strand 7
D
397 401anti-parallel
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