Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y8I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Y8I entry

There is 1 chain in PDB entry 2Y8I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 ASN 2GLU 759
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 2Y8I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
X
10 16Right-handed alpha
Helix 2
2
X
90 94Right-handed 310
Helix 3
3
X
98 112Right-handed alpha
Helix 4
4
X
136 144Right-handed alpha
Helix 5
5
X
154 170Right-handed alpha
Helix 6
6
X
185 196Right-handed alpha
Helix 7
7
X
210 217Right-handed alpha
Helix 8
8
X
218 225Right-handed alpha
Helix 9
9
X
266 270Right-handed 310
Helix 10
10
X
278 283Right-handed 310
Helix 11
11
X
319 334Right-handed alpha
Helix 12
12
X
337 357Right-handed alpha
Helix 13
13
X
374 383Right-handed alpha
Helix 14
14
X
385 395Right-handed alpha
Helix 15
15
X
412 442Right-handed alpha
Helix 16
16
X
465 490Right-handed alpha
Helix 17
17
X
510 519Right-handed alpha
Helix 18
18
X
524 533Right-handed alpha
Helix 19
19
X
539 550Right-handed alpha
Helix 20
20
X
583 589Right-handed alpha
Helix 21
21
X
595 601Right-handed alpha
Helix 22
22
X
608 614Right-handed alpha
Helix 23
23
X
629 643Right-handed alpha
Helix 24
24
X
671 677Right-handed alpha
Helix 25
25
X
679 684Right-handed alpha
Helix 26
26
X
685 690Right-handed alpha
Helix 27
27
X
700 705Right-handed alpha
Helix 28
28
X
718 723Right-handed alpha
Helix 29
29
X
724 727Right-handed 310
Helix 30
30
X
733 737Right-handed 310
Helix 31
31
X
751 756Right-handed alpha
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There are 7 sheets in PDB entry 2Y8I. Click on sheet of interest to get list of strands forming it: XA, XB, XC, XD, XE, XF, XG,

There are 3 strands in XA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
48 51first strand
Strand 2
X
34 37anti-parallel
Strand 3
X
78 79anti-parallel
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There are 7 strands in XB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
116 118first strand
Strand 2
X
123 126anti-parallel
Strand 3
X
649 656parallel
Strand 4
X
173 179parallel
Strand 5
X
447 454parallel
Strand 6
X
245 247anti-parallel
Strand 7
X
253 256anti-parallel
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There are 6 strands in XC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
116 118first strand
Strand 2
X
123 126anti-parallel
Strand 3
X
649 656parallel
Strand 4
X
173 179parallel
Strand 5
X
447 454parallel
Strand 6
X
241 243anti-parallel
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There are 2 strands in XD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
227 230first strand
Strand 2
X
233 237anti-parallel
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There are 2 strands in XE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
360 361first strand
Strand 2
X
367 368anti-parallel
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There are 2 strands in XF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
397 400first strand
Strand 2
X
403 406anti-parallel
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There are 2 strands in XG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
568 572first strand
Strand 2
X
575 579anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il