Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y8L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Y8L entry

There are 3 chains in PDB entry 2Y8L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 393ASN 550
B
 GLY 190ILE 272
E
 SER 23GLU 327
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 2Y8L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
405 420Right-handed alpha
Helix 2
2
A
530 547Right-handed alpha
Helix 3
3
E
26 35Right-handed alpha
Helix 4
4
E
37 41Right-handed 310
Helix 5
5
E
55 67Right-handed alpha
Helix 6
6
E
87 102Right-handed alpha
Helix 7
7
E
107 111Right-handed 310
Helix 8
8
E
112 121Right-handed alpha
Helix 9
9
E
136 148Right-handed alpha
Helix 10
10
E
167 179Right-handed alpha
Helix 11
11
E
185 190Right-handed 310
Helix 12
12
E
191 196Right-handed alpha
Helix 13
13
E
211 223Right-handed alpha
Helix 14
14
E
245 251Right-handed 310
Helix 15
15
E
260 265Right-handed alpha
Helix 16
16
E
266 268Right-handed 310
Helix 17
17
E
283 295Right-handed alpha
Helix 18
18
E
314 323Right-handed alpha
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There are 5 sheets in PDB entry 2Y8L. Click on sheet of interest to get list of strands forming it: BA, AA, EA, EB, EC,

There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 217first strand
Strand 2
A
395 398anti-parallel
Strand 3
B
242 243anti-parallel
Strand 4
B
250 258anti-parallel
Strand 5
B
263 271anti-parallel
Strand 6
E
44 51parallel
Strand 7
E
70 75parallel
Strand 8
E
80 86anti-parallel
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There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 402first strand
Strand 2
A
459 466anti-parallel
Strand 3
A
444 453anti-parallel
Strand 4
A
431 437anti-parallel
Strand 5
A
423 428anti-parallel
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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
152 155first strand
Strand 2
E
162 166anti-parallel
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There are 3 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
206 207first strand
Strand 2
E
226 230parallel
Strand 3
E
236 241anti-parallel
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There are 3 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
277 278first strand
Strand 2
E
298 302parallel
Strand 3
E
308 313anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il