Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y8N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Y8N entry

There are 4 chains in PDB entry 2Y8N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 29LYS 897
B
 MET 1GLU 86
C
 ASP 29LYS 897
D
 MET 1GLU 86
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 90 helices in PDB entry 2Y8N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 46Right-handed alpha
Helix 2
2
A
53 66Right-handed alpha
Helix 3
3
A
70 85Right-handed alpha
Helix 4
4
A
115 127Right-handed alpha
Helix 5
5
A
135 140Right-handed alpha
Helix 6
6
A
170 179Right-handed alpha
Helix 7
7
A
180 182Right-handed 310
Helix 8
8
A
185 195Right-handed alpha
Helix 9
9
A
199 209Right-handed alpha
Helix 10
10
A
215 219Right-handed 310
Helix 11
11
A
228 251Right-handed alpha
Helix 12
12
A
262 295Right-handed alpha
Helix 13
13
A
298 316Right-handed alpha
Helix 14
14
A
322 339Right-handed alpha
Helix 15
15
A
350 355Right-handed alpha
Helix 16
16
A
355 365Right-handed alpha
Helix 17
17
A
369 386Right-handed alpha
Helix 18
18
A
392 397Right-handed alpha
Helix 19
19
A
422 435Right-handed alpha
Helix 20
20
A
451 463Right-handed alpha
Helix 21
21
A
474 486Right-handed alpha
Helix 22
22
A
487 489Right-handed 310
Helix 23
23
A
491 497Right-handed alpha
Helix 24
24
A
540 549Right-handed alpha
Helix 25
25
A
570 604Right-handed alpha
Helix 26
26
A
607 613Right-handed alpha
Helix 27
27
A
615 620Right-handed alpha
Helix 28
28
A
622 626Right-handed 310
Helix 29
29
A
640 655Right-handed alpha
Helix 30
30
A
662 672Right-handed alpha
Helix 31
31
A
673 676Right-handed 310
Helix 32
32
A
678 683Right-handed alpha
Helix 33
33
A
695 709Right-handed alpha
Helix 34
34
A
716 735Right-handed alpha
Helix 35
35
A
754 761Right-handed alpha
Helix 36
36
A
790 799Right-handed alpha
Helix 37
37
A
802 806Right-handed 310
Helix 38
38
A
817 820Right-handed 310
Helix 39
39
A
821 839Right-handed alpha
Helix 40
40
A
850 860Right-handed alpha
Helix 41
41
A
861 864Right-handed 310
Helix 42
42
A
879 881Right-handed 310
Helix 43
43
A
882 892Right-handed alpha
Helix 44
44
B
3 5Right-handed 310
Helix 45
45
B
45 47Right-handed 310
Helix 46
46
C
34 45Right-handed alpha
Helix 47
47
C
53 66Right-handed alpha
Helix 48
48
C
70 85Right-handed alpha
Helix 49
49
C
115 127Right-handed alpha
Helix 50
50
C
135 140Right-handed alpha
Helix 51
51
C
170 179Right-handed alpha
Helix 52
52
C
180 182Right-handed 310
Helix 53
53
C
185 195Right-handed alpha
Helix 54
54
C
199 209Right-handed alpha
Helix 55
55
C
215 219Right-handed 310
Helix 56
56
C
228 251Right-handed alpha
Helix 57
57
C
262 296Right-handed alpha
Helix 58
58
C
298 316Right-handed alpha
Helix 59
59
C
322 339Right-handed alpha
Helix 60
60
C
350 355Right-handed alpha
Helix 61
61
C
355 365Right-handed alpha
Helix 62
62
C
369 386Right-handed alpha
Helix 63
63
C
392 397Right-handed alpha
Helix 64
64
C
422 435Right-handed alpha
Helix 65
65
C
451 463Right-handed alpha
Helix 66
66
C
474 486Right-handed alpha
Helix 67
67
C
487 489Right-handed 310
Helix 68
68
C
491 497Right-handed alpha
Helix 69
69
C
540 549Right-handed alpha
Helix 70
70
C
570 604Right-handed alpha
Helix 71
71
C
607 613Right-handed alpha
Helix 72
72
C
615 620Right-handed alpha
Helix 73
73
C
622 626Right-handed 310
Helix 74
74
C
640 655Right-handed alpha
Helix 75
75
C
662 672Right-handed alpha
Helix 76
76
C
673 675Right-handed 310
Helix 77
77
C
678 683Right-handed alpha
Helix 78
78
C
695 709Right-handed alpha
Helix 79
79
C
716 735Right-handed alpha
Helix 80
80
C
754 762Right-handed alpha
Helix 81
81
C
790 799Right-handed alpha
Helix 82
82
C
802 806Right-handed 310
Helix 83
83
C
817 820Right-handed 310
Helix 84
84
C
821 839Right-handed alpha
Helix 85
85
C
850 860Right-handed alpha
Helix 86
86
C
861 864Right-handed 310
Helix 87
87
C
879 881Right-handed 310
Helix 88
88
C
882 892Right-handed alpha
Helix 89
89
D
3 5Right-handed 310
Helix 90
90
D
45 47Right-handed 310
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There are 20 sheets in PDB entry 2Y8N. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, BA, BB, CA, CB, CC, CD, CE, CF, CG, CH, A, DB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
106 107parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 160first strand
Strand 2
A
164 167anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 225first strand
Strand 2
A
343 347parallel
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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 411first strand
Strand 2
A
442 446parallel
Strand 3
A
470 473parallel
Strand 4
A
843 848anti-parallel
Strand 5
A
812 815parallel
Strand 6
A
894 895parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 501first strand
Strand 2
A
505 507anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
509 516first strand
Strand 2
A
519 526anti-parallel
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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
534 539first strand
Strand 2
A
635 639parallel
Strand 3
A
747 748parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
868 870first strand
Strand 2
A
875 877anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 11first strand
Strand 2
B
16 19anti-parallel
Strand 3
B
25 27anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 52first strand
Strand 2
B
59 62anti-parallel
Strand 3
B
69 72anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 51first strand
Strand 2
C
106 107parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
157 160first strand
Strand 2
C
164 167anti-parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
221 225first strand
Strand 2
C
343 347parallel
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There are 6 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
408 411first strand
Strand 2
C
442 446parallel
Strand 3
C
470 473parallel
Strand 4
C
843 848anti-parallel
Strand 5
C
812 815parallel
Strand 6
C
894 895parallel
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There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
499 501first strand
Strand 2
C
505 507anti-parallel
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There are 2 strands in CF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
509 516first strand
Strand 2
C
519 526anti-parallel
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There are 3 strands in CG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
534 539first strand
Strand 2
C
635 639parallel
Strand 3
C
747 748parallel
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There are 2 strands in CH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
868 870first strand
Strand 2
C
875 877anti-parallel
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There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
9 11first strand
Strand 2
D
16 19anti-parallel
Strand 3
D
25 27anti-parallel
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There are 3 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
51 52first strand
Strand 2
D
59 62anti-parallel
Strand 3
D
69 72anti-parallel
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