Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y8S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Y8S entry

There are 4 chains in PDB entry 2Y8S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 69CYS 479
B
 ASP 1297THR 1332
D
 GLY 69ALA 473
E
 ASP 1297ALA 1331
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 2Y8S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
70 74Right-handed 310
Helix 2
2
A
75 84Right-handed alpha
Helix 3
3
A
144 150Right-handed alpha
Helix 4
4
A
176 181Right-handed alpha
Helix 5
5
A
189 200Right-handed alpha
Helix 6
6
A
272 277Right-handed 310
Helix 7
7
A
281 286Right-handed alpha
Helix 8
8
A
308 310Right-handed 310
Helix 9
9
A
320 331Right-handed alpha
Helix 10
10
A
414 418Right-handed 310
Helix 11
11
A
430 433Right-handed 310
Helix 12
12
A
474 479Right-handed 310
Helix 13
13
B
1297 1305Right-handed alpha
Helix 14
14
D
78 84Right-handed alpha
Helix 15
15
D
144 152Right-handed alpha
Helix 16
16
D
176 181Right-handed alpha
Helix 17
17
D
189 200Right-handed alpha
Helix 18
18
D
272 277Right-handed 310
Helix 19
19
D
281 286Right-handed alpha
Helix 20
20
D
308 310Right-handed 310
Helix 21
21
D
320 331Right-handed alpha
Helix 22
22
D
414 418Right-handed 310
Helix 23
23
E
1297 1305Right-handed alpha
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There are 12 sheets in PDB entry 2Y8S. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, A, DB, C, DD, DE, DF,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 105first strand
Strand 2
A
108 112anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 120first strand
Strand 2
A
268 271anti-parallel
Strand 3
A
217 220anti-parallel
Strand 4
A
225 228anti-parallel
Strand 5
A
174 175anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 127first strand
Strand 2
A
253 259anti-parallel
Strand 3
A
242 243parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 203first strand
Strand 2
B
1313 1316anti-parallel
Strand 3
B
1320 1323anti-parallel
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There are 6 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 306first strand
Strand 2
A
291 300anti-parallel
Strand 3
A
393 404anti-parallel
Strand 4
A
371 376anti-parallel
Strand 5
A
382 387anti-parallel
Strand 6
A
314 317anti-parallel
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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
443 444first strand
Strand 2
A
453 460anti-parallel
Strand 3
A
463 470anti-parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
101 105first strand
Strand 2
D
108 112anti-parallel
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There are 5 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
119 120first strand
Strand 2
D
268 271anti-parallel
Strand 3
D
217 220anti-parallel
Strand 4
D
225 228anti-parallel
Strand 5
D
174 175anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
123 127first strand
Strand 2
D
253 259anti-parallel
Strand 3
D
242 243parallel
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There are 3 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
201 204first strand
Strand 2
E
1313 1316anti-parallel
Strand 3
E
1320 1323anti-parallel
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There are 6 strands in DE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
303 306first strand
Strand 2
D
291 300anti-parallel
Strand 3
D
393 404anti-parallel
Strand 4
D
371 376anti-parallel
Strand 5
D
382 387anti-parallel
Strand 6
D
314 317anti-parallel
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There are 3 strands in DF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
443 444first strand
Strand 2
D
453 460anti-parallel
Strand 3
D
463 470anti-parallel
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