Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y8V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Y8V entry

There are 4 chains in PDB entry 2Y8V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 8HIS 287
B
 GLU 9HIS 287
C
 PRO 8MET 288
D
 HIS 10HIS 287
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 2Y8V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 25Right-handed 310
Helix 2
2
A
31 36Right-handed alpha
Helix 3
3
A
66 68Right-handed 310
Helix 4
4
A
69 82Right-handed alpha
Helix 5
5
A
98 102Right-handed 310
Helix 6
6
A
104 123Right-handed alpha
Helix 7
7
A
136 152Right-handed alpha
Helix 8
8
A
163 168Right-handed 310
Helix 9
9
A
176 185Right-handed alpha
Helix 10
10
A
186 188Right-handed 310
Helix 11
11
A
205 214Right-handed alpha
Helix 12
12
A
217 219Right-handed 310
Helix 13
13
A
228 232Right-handed 310
Helix 14
14
A
238 253Right-handed alpha
Helix 15
15
A
263 267Right-handed 310
Helix 16
16
A
276 286Right-handed alpha
Helix 17
17
B
21 25Right-handed 310
Helix 18
18
B
31 36Right-handed alpha
Helix 19
19
B
66 68Right-handed 310
Helix 20
20
B
69 82Right-handed alpha
Helix 21
21
B
96 101Right-handed alpha
Helix 22
22
B
104 122Right-handed alpha
Helix 23
23
B
136 152Right-handed alpha
Helix 24
24
B
163 168Right-handed 310
Helix 25
25
B
176 185Right-handed alpha
Helix 26
26
B
186 188Right-handed 310
Helix 27
27
B
205 214Right-handed alpha
Helix 28
28
B
217 219Right-handed 310
Helix 29
29
B
228 232Right-handed 310
Helix 30
30
B
238 253Right-handed alpha
Helix 31
31
B
263 267Right-handed 310
Helix 32
32
B
276 286Right-handed alpha
Helix 33
33
C
21 25Right-handed 310
Helix 34
34
C
31 36Right-handed alpha
Helix 35
35
C
66 68Right-handed 310
Helix 36
36
C
69 82Right-handed alpha
Helix 37
37
C
96 101Right-handed alpha
Helix 38
38
C
104 122Right-handed alpha
Helix 39
39
C
136 152Right-handed alpha
Helix 40
40
C
163 168Right-handed 310
Helix 41
41
C
176 185Right-handed alpha
Helix 42
42
C
186 188Right-handed 310
Helix 43
43
C
205 214Right-handed alpha
Helix 44
44
C
217 219Right-handed 310
Helix 45
45
C
228 232Right-handed 310
Helix 46
46
C
238 253Right-handed alpha
Helix 47
47
C
263 267Right-handed 310
Helix 48
48
C
275 288Right-handed alpha
Helix 49
49
D
21 25Right-handed 310
Helix 50
50
D
31 36Right-handed alpha
Helix 51
51
D
66 68Right-handed 310
Helix 52
52
D
69 82Right-handed alpha
Helix 53
53
D
104 122Right-handed alpha
Helix 54
54
D
136 152Right-handed alpha
Helix 55
55
D
163 168Right-handed 310
Helix 56
56
D
176 185Right-handed alpha
Helix 57
57
D
186 188Right-handed 310
Helix 58
58
D
205 214Right-handed alpha
Helix 59
59
D
217 219Right-handed 310
Helix 60
60
D
228 232Right-handed 310
Helix 61
61
D
238 253Right-handed alpha
Helix 62
62
D
263 267Right-handed 310
Helix 63
63
D
275 286Right-handed alpha
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There are 4 sheets in PDB entry 2Y8V. Click on sheet of interest to get list of strands forming it: AA, BA, CA, DA,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 17first strand
Strand 2
A
258 262parallel
Strand 3
A
221 226parallel
Strand 4
A
190 194parallel
Strand 5
A
156 159parallel
Strand 6
A
126 130parallel
Strand 7
A
85 91parallel
Strand 8
A
42 50parallel
Strand 9
A
12 17first strand
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There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 17first strand
Strand 2
B
258 262parallel
Strand 3
B
221 226parallel
Strand 4
B
190 194parallel
Strand 5
B
156 159parallel
Strand 6
B
126 131parallel
Strand 7
B
85 92parallel
Strand 8
B
42 50parallel
Strand 9
B
12 17first strand
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There are 10 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 17first strand
Strand 2
C
258 262parallel
Strand 3
C
221 226parallel
Strand 4
C
190 194parallel
Strand 5
C
156 159parallel
Strand 6
C
126 130parallel
Strand 7
C
85 91parallel
Strand 8
C
42 50parallel
Strand 9
C
57 59anti-parallel
Strand 10
C
12 17parallel
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There are 10 strands in DA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 17first strand
Strand 2
D
258 262parallel
Strand 3
D
42 50parallel
Strand 4
D
57 59anti-parallel
Strand 5
D
85 91parallel
Strand 6
D
126 130parallel
Strand 7
D
156 159parallel
Strand 8
D
190 194parallel
Strand 9
D
221 226parallel
Strand 10
D
12 17parallel
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