Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y98


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Y98 entry

There is 1 chain in PDB entry 2Y98 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 5TRP 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 2Y98. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 30Right-handed alpha
Helix 2
2
A
48 58Right-handed alpha
Helix 3
3
A
63 68Right-handed 310
Helix 4
4
A
82 86Right-handed 310
Helix 5
5
A
89 102Right-handed alpha
Helix 6
6
A
103 110Right-handed alpha
Helix 7
7
A
110 128Right-handed alpha
Helix 8
8
A
134 138Right-handed alpha
Helix 9
9
A
141 152Right-handed alpha
Helix 10
10
A
154 156Right-handed 310
Helix 11
11
A
157 167Right-handed alpha
Helix 12
12
A
175 200Right-handed alpha
Helix 13
13
A
204 212Right-handed alpha
Helix 14
14
A
220 263Right-handed alpha
Helix 15
15
A
266 278Right-handed alpha
Helix 16
16
A
310 315Right-handed alpha
Helix 17
17
A
348 367Right-handed alpha
Helix 18
18
A
375 379Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 2Y98. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 8first strand
Strand 2
A
32 36parallel
Strand 3
A
43 46anti-parallel
Strand 4
A
306 309parallel
Strand 5
A
288 290anti-parallel
Strand 6
A
61 62anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 133first strand
Strand 2
A
394 396anti-parallel
Strand 3
A
371 372anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 296first strand
Strand 2
A
299 301anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il