Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y9E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Y9E entry

There is 1 chain in PDB entry 2Y9E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 ASN 2GLU 759
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 2Y9E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
X
9 15Right-handed alpha
Helix 2
2
X
24 28Right-handed 310
Helix 3
3
X
91 94Right-handed 310
Helix 4
4
X
99 104Right-handed alpha
Helix 5
5
X
104 112Right-handed alpha
Helix 6
6
X
136 141Right-handed alpha
Helix 7
7
X
154 158Right-handed 310
Helix 8
8
X
160 169Right-handed alpha
Helix 9
9
X
185 200Right-handed alpha
Helix 10
10
X
210 217Right-handed alpha
Helix 11
11
X
219 226Right-handed alpha
Helix 12
12
X
265 268Right-handed 310
Helix 13
13
X
279 288Right-handed alpha
Helix 14
14
X
289 296Right-handed alpha
Helix 15
15
X
322 332Right-handed alpha
Helix 16
16
X
340 353Right-handed alpha
Helix 17
17
X
354 356Right-handed 310
Helix 18
18
X
373 379Right-handed alpha
Helix 19
19
X
385 395Right-handed alpha
Helix 20
20
X
410 415Right-handed alpha
Helix 21
21
X
416 439Right-handed alpha
Helix 22
22
X
465 486Right-handed alpha
Helix 23
23
X
488 493Right-handed alpha
Helix 24
24
X
510 519Right-handed alpha
Helix 25
25
X
524 533Right-handed alpha
Helix 26
26
X
540 551Right-handed alpha
Helix 27
27
X
583 588Right-handed alpha
Helix 28
28
X
593 601Right-handed alpha
Helix 29
29
X
607 612Right-handed alpha
Helix 30
30
X
629 646Right-handed alpha
Helix 31
31
X
671 677Right-handed alpha
Helix 32
32
X
682 687Right-handed alpha
Helix 33
33
X
747 751Right-handed 310
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There are 6 sheets in PDB entry 2Y9E. Click on sheet of interest to get list of strands forming it: XA, XB, XC, XD, XE, XF,

There are 3 strands in XA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
48 51first strand
Strand 2
X
34 37anti-parallel
Strand 3
X
78 79anti-parallel
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There are 7 strands in XB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
116 119first strand
Strand 2
X
122 126anti-parallel
Strand 3
X
652 656parallel
Strand 4
X
173 179parallel
Strand 5
X
448 456parallel
Strand 6
X
239 247anti-parallel
Strand 7
X
253 263anti-parallel
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There are 2 strands in XC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
360 361first strand
Strand 2
X
367 368anti-parallel
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There are 2 strands in XD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
397 398first strand
Strand 2
X
405 406anti-parallel
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There are 3 strands in XE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
558 559first strand
Strand 2
X
569 571anti-parallel
Strand 3
X
576 577anti-parallel
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There are 2 strands in XF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
622 623first strand
Strand 2
X
626 627anti-parallel
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