Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y9P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Y9P entry

There are 2 chains in PDB entry 2Y9P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 14ARG 179
B
 LYS 57ASN 180
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2Y9P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 35Right-handed alpha
Helix 2
2
A
116 120Right-handed 310
Helix 3
3
A
129 143Right-handed alpha
Helix 4
4
A
151 159Right-handed alpha
Helix 5
5
A
162 179Right-handed alpha
Helix 6
6
B
67 72Right-handed alpha
Helix 7
7
B
76 80Right-handed 310
Helix 8
8
B
99 108Right-handed alpha
Helix 9
9
B
111 113Right-handed 310
Helix 10
10
B
120 132Right-handed alpha
Helix 11
11
B
139 143Right-handed 310
Helix 12
12
B
150 154Right-handed 310
Helix 13
13
B
155 161Right-handed 310
Helix 14
14
B
170 180Right-handed alpha
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There are 3 sheets in PDB entry 2Y9P. Click on sheet of interest to get list of strands forming it: AA, BA, BB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 52first strand
Strand 2
A
60 66anti-parallel
Strand 3
A
77 83anti-parallel
Strand 4
A
94 97anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 65first strand
Strand 2
B
85 90parallel
Strand 3
B
115 118parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 138first strand
Strand 2
B
164 167parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il