Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y9W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Y9W entry

There are 4 chains in PDB entry 2Y9W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLY 392
B
 SER 2GLY 392
C
 LEU 9VAL 150
D
 ASP 10VAL 150
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 2Y9W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 27Right-handed alpha
Helix 2
2
A
29 46Right-handed alpha
Helix 3
3
A
53 60Right-handed alpha
Helix 4
4
A
89 114Right-handed alpha
Helix 5
5
A
120 131Right-handed alpha
Helix 6
6
A
151 156Right-handed alpha
Helix 7
7
A
190 195Right-handed alpha
Helix 8
8
A
209 234Right-handed alpha
Helix 9
9
A
237 243Right-handed alpha
Helix 10
10
A
254 268Right-handed alpha
Helix 11
11
A
278 282Right-handed 310
Helix 12
12
A
285 289Right-handed 310
Helix 13
13
A
290 310Right-handed alpha
Helix 14
14
A
352 356Right-handed alpha
Helix 15
15
A
357 361Right-handed 310
Helix 16
16
A
365 372Right-handed 310
Helix 17
17
A
375 392Right-handed alpha
Helix 18
18
B
22 27Right-handed alpha
Helix 19
19
B
29 46Right-handed alpha
Helix 20
20
B
53 62Right-handed alpha
Helix 21
21
B
89 114Right-handed alpha
Helix 22
22
B
120 131Right-handed alpha
Helix 23
23
B
151 156Right-handed alpha
Helix 24
24
B
189 194Right-handed 310
Helix 25
25
B
209 234Right-handed alpha
Helix 26
26
B
237 243Right-handed alpha
Helix 27
27
B
254 268Right-handed alpha
Helix 28
28
B
278 282Right-handed 310
Helix 29
29
B
285 290Right-handed 310
Helix 30
30
B
291 310Right-handed alpha
Helix 31
31
B
353 355Right-handed 310
Helix 32
32
B
357 361Right-handed 310
Helix 33
33
B
365 372Right-handed 310
Helix 34
34
B
375 392Right-handed alpha
Helix 35
35
C
141 145Right-handed 310
Helix 36
36
D
141 145Right-handed 310
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There are 15 sheets in PDB entry 2Y9W. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC, A, DB, C, DD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
A
363 364parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 163first strand
Strand 2
A
169 173anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 319first strand
Strand 2
A
332 333anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 343first strand
Strand 2
A
349 351anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 19first strand
Strand 2
B
363 364parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 163first strand
Strand 2
B
169 173anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
318 319first strand
Strand 2
B
332 333anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
338 343first strand
Strand 2
B
349 351anti-parallel
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There are 8 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
72 75first strand
Strand 2
C
81 84anti-parallel
Strand 3
C
37 42anti-parallel
Strand 4
C
21 25anti-parallel
Strand 5
C
15 18anti-parallel
Strand 6
C
146 149anti-parallel
Strand 7
C
104 108anti-parallel
Strand 8
C
95 98anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 58first strand
Strand 2
C
61 66anti-parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
118 123first strand
Strand 2
C
130 135anti-parallel
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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
72 76first strand
Strand 2
D
80 84anti-parallel
Strand 3
D
37 42anti-parallel
Strand 4
D
21 25anti-parallel
Strand 5
D
15 18anti-parallel
Strand 6
D
147 149anti-parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
53 58first strand
Strand 2
D
61 66anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
95 98first strand
Strand 2
D
105 108anti-parallel
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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
118 123first strand
Strand 2
D
130 135anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il