Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y9Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Y9Z entry

There are 6 chains in PDB entry 2Y9Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 789ASP 1075
B
 ALA 134ASN 748
C
 A 8 G 38
D
 C 11 T 41
E
 A 25 G 47
F
 C 2 T 24
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 2Y9Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
814 827Right-handed alpha
Helix 2
2
A
851 862Right-handed alpha
Helix 3
3
A
870 882Right-handed alpha
Helix 4
4
A
889 902Right-handed alpha
Helix 5
5
A
907 911Right-handed alpha
Helix 6
6
A
920 932Right-handed alpha
Helix 7
7
A
944 968Right-handed alpha
Helix 8
8
A
994 1007Right-handed alpha
Helix 9
9
A
1015 1024Right-handed alpha
Helix 10
10
A
1032 1036Right-handed alpha
Helix 11
11
A
1039 1054Right-handed alpha
Helix 12
1
B
179 191Right-handed alpha
Helix 13
2
B
205 212Right-handed alpha
Helix 14
3
B
245 265Right-handed alpha
Helix 15
4
B
284 288Right-handed alpha
Helix 16
5
B
293 309Right-handed alpha
Helix 17
6
B
385 402Right-handed alpha
Helix 18
7
B
404 414Right-handed alpha
Helix 19
8
B
437 453Right-handed alpha
Helix 20
9
B
461 466Right-handed alpha
Helix 21
10
B
473 490Right-handed alpha
Helix 22
11
B
500 513Right-handed alpha
Helix 23
12
B
569 580Right-handed alpha
Helix 24
13
B
608 617Right-handed alpha
Helix 25
14
B
634 648Right-handed alpha
Helix 26
15
B
697 726Right-handed alpha
Helix 27
16
B
735 739Right-handed alpha
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There is 1 sheet ( BA) in PDB entry 2Y9Z.

There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
627 629first strand
Strand 2
B
604 606anti-parallel
Strand 3
B
547 550anti-parallel
Strand 4
B
539 543anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il