Analysis of interatomic Contacts of Structural Units in PDB entry:
2YA0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YA0 entry

There is 1 chain in PDB entry 2YA0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -18THR 695
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 2YA0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-18 -9Right-handed alpha
Helix 2
2
A
92 95Right-handed 310
Helix 3
3
A
98 102Right-handed 310
Helix 4
4
A
110 114Right-handed 310
Helix 5
5
A
129 133Right-handed 310
Helix 6
6
A
139 145Right-handed alpha
Helix 7
7
A
146 150Right-handed 310
Helix 8
8
A
159 165Right-handed alpha
Helix 9
9
A
166 174Right-handed alpha
Helix 10
10
A
191 194Right-handed 310
Helix 11
11
A
232 248Right-handed alpha
Helix 12
12
A
264 269Right-handed alpha
Helix 13
13
A
297 316Right-handed alpha
Helix 14
14
A
324 328Right-handed 310
Helix 15
15
A
329 344Right-handed alpha
Helix 16
16
A
369 376Right-handed 310
Helix 17
17
A
383 392Right-handed alpha
Helix 18
18
A
410 418Right-handed alpha
Helix 19
19
A
428 430Right-handed 310
Helix 20
20
A
443 453Right-handed alpha
Helix 21
21
A
458 479Right-handed alpha
Helix 22
22
A
499 503Right-handed 310
Helix 23
23
A
507 511Right-handed 310
Helix 24
24
A
539 544Right-handed alpha
Helix 25
25
A
546 552Right-handed alpha
Helix 26
26
A
556 575Right-handed alpha
Helix 27
27
A
576 581Right-handed 310
Helix 28
28
A
583 590Right-handed alpha
Helix 29
29
A
640 646Right-handed 310
Helix 30
30
A
686 690Right-handed 310
Back to top of page

There are 10 sheets in PDB entry 2YA0. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-3 1first strand
Strand 2
A
6 12anti-parallel
Strand 3
A
45 50anti-parallel
Strand 4
A
39 40anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 37first strand
Strand 2
A
18 24anti-parallel
Strand 3
A
65 72anti-parallel
Strand 4
A
75 79anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 37first strand
Strand 2
A
18 24anti-parallel
Strand 3
A
65 72anti-parallel
Strand 4
A
106 107anti-parallel
Strand 5
A
86 87anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 79first strand
Strand 2
A
65 72anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 138first strand
Strand 2
A
177 180parallel
Strand 3
A
251 256parallel
Strand 4
A
319 322parallel
Strand 5
A
348 351parallel
Strand 6
A
380 382parallel
Strand 7
A
432 434parallel
Strand 8
A
482 486parallel
Strand 9
A
135 138parallel
Back to list of sheets
Back to top of page

There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 287first strand
Strand 2
A
290 291anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 409first strand
Strand 2
A
605 606anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
515 519first strand
Strand 2
A
525 532anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
591 593first strand
Strand 2
A
608 614anti-parallel
Strand 3
A
620 626anti-parallel
Strand 4
A
679 685anti-parallel
Strand 5
A
647 650anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
632 635first strand
Strand 2
A
672 675anti-parallel
Strand 3
A
666 668anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il