Analysis of interatomic Contacts of Structural Units in PDB entry:
2YBA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YBA entry

There are 4 chains in PDB entry 2YBA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 9ASP 415
B
 GLU 10ASP 415
C
 ALA 1THR 11
D
 ALA 1ALA 15
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 2YBA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 35Right-handed alpha
Helix 2
2
A
159 161Right-handed 310
Helix 3
3
A
352 354Right-handed 310
Helix 4
4
A
359 364Right-handed alpha
Helix 5
5
A
409 414Right-handed alpha
Helix 6
6
B
11 35Right-handed alpha
Helix 7
7
B
159 161Right-handed 310
Helix 8
8
B
352 354Right-handed 310
Helix 9
9
B
359 364Right-handed alpha
Helix 10
10
B
409 414Right-handed alpha
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There are 14 sheets in PDB entry 2YBA. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, BA, BB, BC, BD, BE, BF, BG,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 43first strand
Strand 2
A
402 408anti-parallel
Strand 3
A
393 398anti-parallel
Strand 4
A
381 386anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 59first strand
Strand 2
A
65 73anti-parallel
Strand 3
A
81 91anti-parallel
Strand 4
A
119 127anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 137first strand
Strand 2
A
140 147anti-parallel
Strand 3
A
153 157anti-parallel
Strand 4
A
175 178anti-parallel
Strand 5
A
220 222parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 189first strand
Strand 2
A
196 200anti-parallel
Strand 3
A
206 210anti-parallel
Strand 4
A
225 227anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 239first strand
Strand 2
A
246 251anti-parallel
Strand 3
A
255 260anti-parallel
Strand 4
A
271 274anti-parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 285first strand
Strand 2
A
292 297anti-parallel
Strand 3
A
301 306anti-parallel
Strand 4
A
315 318anti-parallel
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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 329first strand
Strand 2
A
336 341anti-parallel
Strand 3
A
346 350anti-parallel
Strand 4
A
370 374anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 43first strand
Strand 2
B
402 408anti-parallel
Strand 3
B
393 398anti-parallel
Strand 4
B
381 386anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 59first strand
Strand 2
B
65 73anti-parallel
Strand 3
B
81 91anti-parallel
Strand 4
B
119 127anti-parallel
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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 137first strand
Strand 2
B
140 147anti-parallel
Strand 3
B
153 157anti-parallel
Strand 4
B
175 178anti-parallel
Strand 5
B
220 222parallel
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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 189first strand
Strand 2
B
196 200anti-parallel
Strand 3
B
206 210anti-parallel
Strand 4
B
225 227anti-parallel
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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 239first strand
Strand 2
B
246 251anti-parallel
Strand 3
B
255 260anti-parallel
Strand 4
B
271 274anti-parallel
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There are 4 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
280 285first strand
Strand 2
B
292 297anti-parallel
Strand 3
B
301 306anti-parallel
Strand 4
B
315 318anti-parallel
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There are 4 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
324 329first strand
Strand 2
B
336 341anti-parallel
Strand 3
B
346 350anti-parallel
Strand 4
B
370 374anti-parallel
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