Analysis of interatomic Contacts of Structural Units in PDB entry:
2YBO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YBO entry

There is 1 chain in PDB entry 2YBO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 11GLY 266
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 2YBO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 33Right-handed 310
Helix 2
2
A
34 42Right-handed alpha
Helix 3
3
A
54 61Right-handed alpha
Helix 4
4
A
80 94Right-handed alpha
Helix 5
5
A
111 122Right-handed alpha
Helix 6
6
A
133 142Right-handed alpha
Helix 7
7
A
171 176Right-handed alpha
Helix 8
8
A
187 189Right-handed 310
Helix 9
9
A
190 201Right-handed alpha
Helix 10
10
A
229 237Right-handed alpha
Helix 11
11
A
249 254Right-handed alpha
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There are 2 sheets in PDB entry 2YBO. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 69first strand
Strand 2
A
46 49parallel
Strand 3
A
98 103parallel
Strand 4
A
20 26parallel
Strand 5
A
126 129parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 159first strand
Strand 2
A
181 185parallel
Strand 3
A
243 247anti-parallel
Strand 4
A
208 213anti-parallel
Strand 5
A
221 226anti-parallel
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