Analysis of interatomic Contacts of Structural Units in PDB entry:
2YF0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YF0 entry

There is 1 chain in PDB entry 2YF0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 4THR 505
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 2YF0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
84 99Right-handed alpha
Helix 2
2
A
107 111Right-handed 310
Helix 3
3
A
118 126Right-handed alpha
Helix 4
4
A
129 137Right-handed alpha
Helix 5
5
A
148 151Right-handed 310
Helix 6
6
A
170 181Right-handed alpha
Helix 7
7
A
182 185Right-handed 310
Helix 8
8
A
214 228Right-handed alpha
Helix 9
9
A
273 289Right-handed alpha
Helix 10
10
A
294 305Right-handed alpha
Helix 11
11
A
306 327Right-handed alpha
Helix 12
12
A
341 355Right-handed alpha
Helix 13
13
A
356 359Right-handed 310
Helix 14
14
A
360 372Right-handed alpha
Helix 15
15
A
378 384Right-handed alpha
Helix 16
16
A
389 393Right-handed 310
Helix 17
17
A
395 411Right-handed alpha
Helix 18
18
A
418 430Right-handed alpha
Helix 19
19
A
441 448Right-handed alpha
Helix 20
20
A
449 454Right-handed alpha
Helix 21
21
A
457 462Right-handed alpha
Helix 22
22
A
464 469Right-handed alpha
Helix 23
23
A
495 503Right-handed alpha
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There are 3 sheets in PDB entry 2YF0. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 49first strand
Strand 2
A
35 40anti-parallel
Strand 3
A
26 31anti-parallel
Strand 4
A
5 11anti-parallel
Strand 5
A
77 82anti-parallel
Strand 6
A
66 72anti-parallel
Strand 7
A
53 58anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 147first strand
Strand 2
A
163 166anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 192first strand
Strand 2
A
199 202anti-parallel
Strand 3
A
332 334parallel
Strand 4
A
234 238parallel
Strand 5
A
264 268parallel
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