Analysis of interatomic Contacts of Structural Units in PDB entry:
2YFH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YFH entry

There are 6 chains in PDB entry 2YFH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TRP 448
B
 SER 2TRP 448
C
 SER 2TRP 448
D
 SER 2TRP 448
E
 MET 1TRP 448
F
 SER 2TRP 448
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are121 helices in PDB entry 2YFH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 16Right-handed alpha
Helix 2
2
A
19 31Right-handed alpha
Helix 3
3
A
33 39Right-handed alpha
Helix 4
4
A
41 46Right-handed alpha
Helix 5
5
A
100 117Right-handed alpha
Helix 6
6
A
137 153Right-handed alpha
Helix 7
7
A
154 156Right-handed 310
Helix 8
8
A
170 186Right-handed alpha
Helix 9
9
A
197 201Right-handed 310
Helix 10
10
A
208 225Right-handed alpha
Helix 11
11
A
240 253Right-handed alpha
Helix 12
12
A
276 281Right-handed alpha
Helix 13
13
A
291 298Right-handed alpha
Helix 14
14
A
328 337Right-handed alpha
Helix 15
15
A
351 360Right-handed alpha
Helix 16
16
A
367 372Right-handed alpha
Helix 17
17
A
373 387Right-handed alpha
Helix 18
18
A
393 419Right-handed alpha
Helix 19
19
A
424 445Right-handed alpha
Helix 20
20
B
2 16Right-handed alpha
Helix 21
21
B
19 31Right-handed alpha
Helix 22
22
B
33 40Right-handed alpha
Helix 23
23
B
40 46Right-handed alpha
Helix 24
24
B
47 53Right-handed alpha
Helix 25
25
B
100 118Right-handed alpha
Helix 26
26
B
137 153Right-handed alpha
Helix 27
27
B
170 186Right-handed alpha
Helix 28
28
B
197 201Right-handed 310
Helix 29
29
B
208 224Right-handed alpha
Helix 30
30
B
240 253Right-handed alpha
Helix 31
31
B
274 286Right-handed alpha
Helix 32
32
B
291 299Right-handed alpha
Helix 33
33
B
327 338Right-handed alpha
Helix 34
34
B
351 359Right-handed alpha
Helix 35
35
B
367 372Right-handed alpha
Helix 36
36
B
373 387Right-handed alpha
Helix 37
37
B
393 418Right-handed alpha
Helix 38
38
B
424 444Right-handed alpha
Helix 39
39
C
2 16Right-handed alpha
Helix 40
40
C
19 31Right-handed alpha
Helix 41
41
C
33 39Right-handed alpha
Helix 42
42
C
41 46Right-handed alpha
Helix 43
43
C
47 53Right-handed alpha
Helix 44
44
C
100 118Right-handed alpha
Helix 45
45
C
137 153Right-handed alpha
Helix 46
46
C
154 156Right-handed 310
Helix 47
47
C
172 186Right-handed alpha
Helix 48
48
C
189 193Right-handed 310
Helix 49
49
C
197 201Right-handed 310
Helix 50
50
C
208 224Right-handed alpha
Helix 51
51
C
240 253Right-handed alpha
Helix 52
52
C
274 285Right-handed alpha
Helix 53
53
C
291 299Right-handed alpha
Helix 54
54
C
327 337Right-handed alpha
Helix 55
55
C
351 356Right-handed alpha
Helix 56
56
C
359 363Right-handed 310
Helix 57
57
C
367 372Right-handed alpha
Helix 58
58
C
373 388Right-handed alpha
Helix 59
59
C
393 411Right-handed alpha
Helix 60
60
C
416 420Right-handed 310
Helix 61
61
C
430 444Right-handed alpha
Helix 62
62
D
2 16Right-handed alpha
Helix 63
63
D
19 32Right-handed alpha
Helix 64
64
D
33 40Right-handed alpha
Helix 65
65
D
41 46Right-handed alpha
Helix 66
66
D
47 53Right-handed alpha
Helix 67
67
D
100 118Right-handed alpha
Helix 68
68
D
137 153Right-handed alpha
Helix 69
69
D
154 156Right-handed 310
Helix 70
70
D
170 186Right-handed alpha
Helix 71
71
D
189 193Right-handed 310
Helix 72
72
D
208 225Right-handed alpha
Helix 73
73
D
240 253Right-handed alpha
Helix 74
74
D
274 283Right-handed alpha
Helix 75
75
D
291 298Right-handed alpha
Helix 76
76
D
327 337Right-handed alpha
Helix 77
77
D
367 372Right-handed alpha
Helix 78
78
D
373 387Right-handed alpha
Helix 79
79
D
393 419Right-handed alpha
Helix 80
80
D
424 444Right-handed alpha
Helix 81
81
E
1 16Right-handed alpha
Helix 82
82
E
19 31Right-handed alpha
Helix 83
83
E
33 40Right-handed alpha
Helix 84
84
E
41 46Right-handed alpha
Helix 85
85
E
47 54Right-handed alpha
Helix 86
86
E
100 119Right-handed alpha
Helix 87
87
E
137 153Right-handed alpha
Helix 88
88
E
154 156Right-handed 310
Helix 89
89
E
170 186Right-handed alpha
Helix 90
90
E
189 193Right-handed 310
Helix 91
91
E
205 224Right-handed alpha
Helix 92
92
E
240 251Right-handed alpha
Helix 93
93
E
274 285Right-handed alpha
Helix 94
94
E
291 300Right-handed alpha
Helix 95
95
E
308 312Right-handed 310
Helix 96
96
E
327 337Right-handed alpha
Helix 97
97
E
351 359Right-handed alpha
Helix 98
98
E
367 372Right-handed alpha
Helix 99
99
E
373 383Right-handed alpha
Helix 100
100
E
394 419Right-handed alpha
Helix 101
101
E
432 444Right-handed alpha
Helix 102
102
F
2 16Right-handed alpha
Helix 103
103
F
19 31Right-handed alpha
Helix 104
104
F
33 39Right-handed alpha
Helix 105
105
F
41 46Right-handed alpha
Helix 106
106
F
47 53Right-handed alpha
Helix 107
107
F
100 118Right-handed alpha
Helix 108
108
F
137 153Right-handed alpha
Helix 109
109
F
154 156Right-handed 310
Helix 110
110
F
170 186Right-handed alpha
Helix 111
111
F
197 201Right-handed 310
Helix 112
112
F
208 224Right-handed alpha
Helix 113
113
F
240 252Right-handed alpha
Helix 114
114
F
274 286Right-handed alpha
Helix 115
115
F
291 299Right-handed alpha
Helix 116
116
F
308 312Right-handed 310
Helix 117
117
F
327 337Right-handed alpha
Helix 118
118
F
367 372Right-handed alpha
Helix 119
119
F
373 389Right-handed alpha
Helix 120
120
F
393 414Right-handed alpha
Helix 121
121
F
424 444Right-handed alpha
Back to top of page

There are 18 sheets in PDB entry 2YFH. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, CA, CB, CC, A, DB, EA, EB, EC, FA, FB, FC,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 95first strand
Strand 2
A
124 129parallel
Strand 3
A
72 83anti-parallel
Strand 4
A
57 66anti-parallel
Strand 5
D
57 65anti-parallel
Strand 6
D
73 83anti-parallel
Strand 7
D
124 129anti-parallel
Strand 8
D
89 95parallel
Strand 9
D
161 164parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 90first strand
Strand 2
A
161 162parallel
Back to list of sheets
Back to top of page

There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 257first strand
Strand 2
A
233 237parallel
Strand 3
A
316 319parallel
Strand 4
A
341 343parallel
Strand 5
A
364 366parallel
Back to list of sheets
Back to top of page

There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 261first strand
Strand 2
A
265 268anti-parallel
Strand 3
A
302 305anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 164first strand
Strand 2
B
89 95parallel
Strand 3
B
124 129parallel
Strand 4
B
72 83anti-parallel
Strand 5
B
57 66anti-parallel
Strand 6
C
57 66anti-parallel
Strand 7
C
72 83anti-parallel
Strand 8
C
124 129anti-parallel
Strand 9
C
93 95parallel
Back to list of sheets
Back to top of page

There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
256 257first strand
Strand 2
B
233 237parallel
Strand 3
B
316 319parallel
Strand 4
B
341 343parallel
Strand 5
B
364 366parallel
Back to list of sheets
Back to top of page

There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 262first strand
Strand 2
B
265 268anti-parallel
Strand 3
B
302 304anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
89 90first strand
Strand 2
C
161 162parallel
Back to list of sheets
Back to top of page

There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
256 257first strand
Strand 2
C
233 236parallel
Strand 3
C
316 318parallel
Strand 4
C
341 343parallel
Strand 5
C
364 366parallel
Back to list of sheets
Back to top of page

There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
259 261first strand
Strand 2
C
266 268anti-parallel
Strand 3
C
302 304anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
256 257first strand
Strand 2
D
233 237parallel
Strand 3
D
316 319parallel
Strand 4
D
341 343parallel
Strand 5
D
364 366parallel
Back to list of sheets
Back to top of page

There are 3 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
261 262first strand
Strand 2
D
265 268anti-parallel
Strand 3
D
302 304anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
161 164first strand
Strand 2
E
89 95parallel
Strand 3
E
124 129parallel
Strand 4
E
72 83anti-parallel
Strand 5
E
57 66anti-parallel
Strand 6
F
57 66anti-parallel
Strand 7
F
72 83anti-parallel
Strand 8
F
124 129anti-parallel
Strand 9
F
93 95parallel
Back to list of sheets
Back to top of page

There are 4 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
256 257first strand
Strand 2
E
233 237parallel
Strand 3
E
316 319parallel
Strand 4
E
341 342parallel
Back to list of sheets
Back to top of page

There are 3 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
259 261first strand
Strand 2
E
265 268anti-parallel
Strand 3
E
302 305anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
89 90first strand
Strand 2
F
161 162parallel
Back to list of sheets
Back to top of page

There are 5 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
256 257first strand
Strand 2
F
233 237parallel
Strand 3
F
316 319parallel
Strand 4
F
341 343parallel
Strand 5
F
364 366parallel
Back to list of sheets
Back to top of page

There are 3 strands in FC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
259 262first strand
Strand 2
F
265 268anti-parallel
Strand 3
F
302 305anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il