Analysis of interatomic Contacts of Structural Units in PDB entry:
2YFJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YFJ entry

There are 12 chains in PDB entry 2YFJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASN 18PRO 459
B
PHE 9PHE 188
C
ASN 18PRO 459
D
PHE 9PHE 188
E
ASN 18PRO 459
F
PHE 9PHE 188
G
ASN 18PRO 459
H
PHE 9PHE 188
I
ASN 18PRO 459
J
PHE 9PHE 188
K
ASN 18PRO 459
L
PHE 9PHE 188
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are140 helices in PDB entry 2YFJ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
20 26Right-handed alpha
Helix 2
2
A
37 41Right-handed 310
Helix 3
3
A
42 53Right-handed alpha
Helix 4
4
A
65 67Right-handed 310
Helix 5
5
A
138 143Right-handed alpha
Helix 6
6
A
154 158Right-handed 310
Helix 7
7
A
182 188Right-handed alpha
Helix 8
8
A
190 199Right-handed alpha
Helix 9
9
A
219 230Right-handed alpha
Helix 10
10
A
231 236Right-handed alpha
Helix 11
11
A
239 247Right-handed alpha
Helix 12
12
A
252 256Right-handed 310
Helix 13
13
A
281 298Right-handed alpha
Helix 14
14
A
299 309Right-handed alpha
Helix 15
15
A
310 313Right-handed 310
Helix 16
16
A
315 317Right-handed 310
Helix 17
17
A
363 379Right-handed alpha
Helix 18
18
A
384 399Right-handed alpha
Helix 19
19
A
402 406Right-handed 310
Helix 20
20
A
435 451Right-handed alpha
Helix 21
21
A
453 458Right-handed alpha
Helix 22
22
B
20 40Right-handed alpha
Helix 23
23
B
42 48Right-handed alpha
Helix 24
24
B
65 72Right-handed 310
Helix 25
25
B
85 97Right-handed alpha
Helix 26
26
B
101 105Right-handed 310
Helix 27
27
C
20 26Right-handed alpha
Helix 28
28
C
37 41Right-handed 310
Helix 29
29
C
42 53Right-handed alpha
Helix 30
30
C
65 67Right-handed 310
Helix 31
31
C
138 143Right-handed alpha
Helix 32
32
C
154 158Right-handed 310
Helix 33
33
C
182 188Right-handed alpha
Helix 34
34
C
190 199Right-handed alpha
Helix 35
35
C
219 230Right-handed alpha
Helix 36
36
C
231 236Right-handed alpha
Helix 37
37
C
239 247Right-handed alpha
Helix 38
38
C
281 298Right-handed alpha
Helix 39
39
C
299 310Right-handed alpha
Helix 40
40
C
311 313Right-handed 310
Helix 41
41
C
315 317Right-handed 310
Helix 42
42
C
363 379Right-handed alpha
Helix 43
43
C
384 399Right-handed alpha
Helix 44
44
C
435 451Right-handed alpha
Helix 45
45
C
453 458Right-handed alpha
Helix 46
46
D
20 40Right-handed alpha
Helix 47
47
D
42 48Right-handed alpha
Helix 48
48
D
65 72Right-handed 310
Helix 49
49
D
85 97Right-handed alpha
Helix 50
50
D
101 105Right-handed 310
Helix 51
51
E
20 26Right-handed alpha
Helix 52
52
E
37 41Right-handed 310
Helix 53
53
E
42 53Right-handed alpha
Helix 54
54
E
65 67Right-handed 310
Helix 55
55
E
138 143Right-handed alpha
Helix 56
56
E
154 158Right-handed 310
Helix 57
57
E
182 188Right-handed alpha
Helix 58
58
E
190 199Right-handed alpha
Helix 59
59
E
219 230Right-handed alpha
Helix 60
60
E
239 247Right-handed alpha
Helix 61
61
E
281 289Right-handed alpha
Helix 62
62
E
289 298Right-handed alpha
Helix 63
63
E
298 309Right-handed alpha
Helix 64
64
E
363 379Right-handed alpha
Helix 65
65
E
384 399Right-handed alpha
Helix 66
66
E
402 406Right-handed 310
Helix 67
67
E
435 451Right-handed alpha
Helix 68
68
E
453 458Right-handed alpha
Helix 69
69
F
20 40Right-handed alpha
Helix 70
70
F
42 48Right-handed alpha
Helix 71
71
F
65 72Right-handed 310
Helix 72
72
F
85 97Right-handed alpha
Helix 73
73
F
101 105Right-handed 310
Helix 74
74
G
20 26Right-handed alpha
Helix 75
75
G
37 41Right-handed 310
Helix 76
76
G
42 53Right-handed alpha
Helix 77
77
G
65 67Right-handed 310
Helix 78
78
G
138 143Right-handed alpha
Helix 79
79
G
182 188Right-handed alpha
Helix 80
80
G
190 199Right-handed alpha
Helix 81
81
G
219 230Right-handed alpha
Helix 82
82
G
239 247Right-handed alpha
Helix 83
83
G
281 288Right-handed alpha
Helix 84
84
G
289 298Right-handed alpha
Helix 85
85
G
299 309Right-handed alpha
Helix 86
86
G
363 379Right-handed alpha
Helix 87
87
G
384 399Right-handed alpha
Helix 88
88
G
402 406Right-handed 310
Helix 89
89
G
435 451Right-handed alpha
Helix 90
90
G
453 458Right-handed alpha
Helix 91
91
H
20 40Right-handed alpha
Helix 92
92
H
42 48Right-handed alpha
Helix 93
93
H
65 72Right-handed 310
Helix 94
94
H
85 97Right-handed alpha
Helix 95
95
H
101 105Right-handed 310
Helix 96
96
I
20 26Right-handed alpha
Helix 97
97
I
37 41Right-handed 310
Helix 98
98
I
42 53Right-handed alpha
Helix 99
99
I
54 57Right-handed 310
Helix 100
100
I
65 67Right-handed 310
Helix 101
101
I
138 143Right-handed alpha
Helix 102
102
I
154 158Right-handed 310
Helix 103
103
I
182 188Right-handed alpha
Helix 104
104
I
190 199Right-handed alpha
Helix 105
105
I
219 230Right-handed alpha
Helix 106
106
I
239 247Right-handed alpha
Helix 107
107
I
281 298Right-handed alpha
Helix 108
108
I
299 309Right-handed alpha
Helix 109
109
I
310 313Right-handed 310
Helix 110
110
I
315 319Right-handed 310
Helix 111
111
I
363 379Right-handed alpha
Helix 112
112
I
384 399Right-handed alpha
Helix 113
113
I
435 451Right-handed alpha
Helix 114
114
I
453 458Right-handed alpha
Helix 115
115
J
20 40Right-handed alpha
Helix 116
116
J
42 48Right-handed alpha
Helix 117
117
J
65 72Right-handed 310
Helix 118
118
J
85 97Right-handed alpha
Helix 119
119
J
101 105Right-handed 310
Helix 120
120
K
20 26Right-handed alpha
Helix 121
121
K
37 41Right-handed 310
Helix 122
122
K
42 53Right-handed alpha
Helix 123
123
K
65 67Right-handed 310
Helix 124
124
K
138 143Right-handed alpha
Helix 125
125
K
154 158Right-handed 310
Helix 126
126
K
182 188Right-handed alpha
Helix 127
127
K
190 199Right-handed alpha
Helix 128
128
K
219 230Right-handed alpha
Helix 129
129
K
239 247Right-handed alpha
Helix 130
130
K
280 289Right-handed alpha
Helix 131
131
K
289 298Right-handed alpha
Helix 132
132
K
298 309Right-handed alpha
Helix 133
133
K
363 379Right-handed alpha
Helix 134
134
K
384 399Right-handed alpha
Helix 135
135
K
435 451Right-handed alpha
Helix 136
136
L
20 40Right-handed alpha
Helix 137
137
L
42 48Right-handed alpha
Helix 138
138
L
65 72Right-handed 310
Helix 139
139
L
85 97Right-handed alpha
Helix 140
140
L
101 105Right-handed 310
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There are 42 sheets in PDB entry 2YFJ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, BA, CA, CB, CC, CD, CE, CF, CG, A, EA, EB, EC, ED, EE, EF, EG, FA, GA, GB, GC, GD, HA, IA, IB, IC, ID, IE, IF, IG, JA, KA, KB, KC, KD, LA,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
28 29first strand
Strand 2
A
34 35anti-parallel
Strand 3
A
409 410anti-parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
59 63first strand
Strand 2
A
171 175anti-parallel
Strand 3
A
162 168anti-parallel
Strand 4
A
93 97anti-parallel
Strand 5
A
81 87anti-parallel
Strand 6
A
72 78anti-parallel
Strand 7
A
112 114anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
118 119first strand
Strand 2
A
126 127anti-parallel
Strand 3
A
133 135anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
205 207first strand
Strand 2
A
350 359anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
212 216first strand
Strand 2
A
350 359anti-parallel
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There are 8 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
428 431first strand
Strand 2
A
262 266anti-parallel
Strand 3
A
273 278anti-parallel
Strand 4
A
319 326anti-parallel
Strand 5
A
330 332anti-parallel
Strand 6
A
338 344anti-parallel
Strand 7
A
350 359anti-parallel
Strand 8
A
212 216anti-parallel
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There are 8 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
428 431first strand
Strand 2
A
262 266anti-parallel
Strand 3
A
273 278anti-parallel
Strand 4
A
319 326anti-parallel
Strand 5
A
330 332anti-parallel
Strand 6
A
338 344anti-parallel
Strand 7
A
350 359anti-parallel
Strand 8
A
205 207anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
80 84first strand
Strand 2
B
50 59anti-parallel
Strand 3
B
165 174parallel
Strand 4
B
144 158anti-parallel
Strand 5
B
127 140anti-parallel
Strand 6
B
109 121anti-parallel
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There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
28 29first strand
Strand 2
C
34 35anti-parallel
Strand 3
C
409 410anti-parallel
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There are 7 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
59 63first strand
Strand 2
C
171 175anti-parallel
Strand 3
C
162 168anti-parallel
Strand 4
C
93 97anti-parallel
Strand 5
C
81 87anti-parallel
Strand 6
C
72 78anti-parallel
Strand 7
C
112 114anti-parallel
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There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
118 119first strand
Strand 2
C
126 127anti-parallel
Strand 3
C
133 135anti-parallel
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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
205 207first strand
Strand 2
C
350 359anti-parallel
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There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
212 216first strand
Strand 2
C
350 359anti-parallel
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There are 8 strands in CF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
428 431first strand
Strand 2
C
262 266anti-parallel
Strand 3
C
273 278anti-parallel
Strand 4
C
319 326anti-parallel
Strand 5
C
330 332anti-parallel
Strand 6
C
338 344anti-parallel
Strand 7
C
350 359anti-parallel
Strand 8
C
212 216anti-parallel
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There are 8 strands in CG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
428 431first strand
Strand 2
C
262 266anti-parallel
Strand 3
C
273 278anti-parallel
Strand 4
C
319 326anti-parallel
Strand 5
C
330 332anti-parallel
Strand 6
C
338 344anti-parallel
Strand 7
C
350 359anti-parallel
Strand 8
C
205 207anti-parallel
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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
80 84first strand
Strand 2
D
50 59anti-parallel
Strand 3
D
165 174parallel
Strand 4
D
144 158anti-parallel
Strand 5
D
127 140anti-parallel
Strand 6
D
109 121anti-parallel
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There are 3 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
28 29first strand
Strand 2
E
34 35anti-parallel
Strand 3
E
409 410anti-parallel
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There are 7 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
59 63first strand
Strand 2
E
171 175anti-parallel
Strand 3
E
162 168anti-parallel
Strand 4
E
93 97anti-parallel
Strand 5
E
81 87anti-parallel
Strand 6
E
72 78anti-parallel
Strand 7
E
112 114anti-parallel
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There are 3 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
118 119first strand
Strand 2
E
126 127anti-parallel
Strand 3
E
133 135anti-parallel
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There are 2 strands in ED sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
205 207first strand
Strand 2
E
350 359anti-parallel
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There are 2 strands in EE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
212 216first strand
Strand 2
E
350 359anti-parallel
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There are 8 strands in EF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
428 431first strand
Strand 2
E
262 266anti-parallel
Strand 3
E
273 278anti-parallel
Strand 4
E
319 326anti-parallel
Strand 5
E
330 332anti-parallel
Strand 6
E
338 344anti-parallel
Strand 7
E
350 359anti-parallel
Strand 8
E
212 216anti-parallel
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There are 8 strands in EG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
428 431first strand
Strand 2
E
262 266anti-parallel
Strand 3
E
273 278anti-parallel
Strand 4
E
319 326anti-parallel
Strand 5
E
330 332anti-parallel
Strand 6
E
338 344anti-parallel
Strand 7
E
350 359anti-parallel
Strand 8
E
205 207anti-parallel
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There are 6 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
80 84first strand
Strand 2
F
50 59anti-parallel
Strand 3
F
165 174parallel
Strand 4
F
144 158anti-parallel
Strand 5
F
127 140anti-parallel
Strand 6
F
109 121anti-parallel
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There are 3 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
28 29first strand
Strand 2
G
34 35anti-parallel
Strand 3
G
409 410anti-parallel
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There are 7 strands in GB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
59 63first strand
Strand 2
G
171 175anti-parallel
Strand 3
G
162 168anti-parallel
Strand 4
G
93 97anti-parallel
Strand 5
G
81 87anti-parallel
Strand 6
G
72 78anti-parallel
Strand 7
G
112 114anti-parallel
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There are 3 strands in GC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
118 119first strand
Strand 2
G
126 127anti-parallel
Strand 3
G
133 135anti-parallel
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There are 8 strands in GD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
205 216first strand
Strand 2
G
350 359anti-parallel
Strand 3
G
338 344anti-parallel
Strand 4
G
330 333anti-parallel
Strand 5
G
319 326anti-parallel
Strand 6
G
273 278anti-parallel
Strand 7
G
262 266anti-parallel
Strand 8
G
428 431anti-parallel
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There are 6 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
80 84first strand
Strand 2
H
50 59anti-parallel
Strand 3
H
165 174parallel
Strand 4
H
144 158anti-parallel
Strand 5
H
127 140anti-parallel
Strand 6
H
109 121anti-parallel
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There are 3 strands in IA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
28 29first strand
Strand 2
I
34 35anti-parallel
Strand 3
I
409 410anti-parallel
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There are 7 strands in IB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
59 63first strand
Strand 2
I
171 175anti-parallel
Strand 3
I
162 168anti-parallel
Strand 4
I
93 97anti-parallel
Strand 5
I
81 87anti-parallel
Strand 6
I
72 78anti-parallel
Strand 7
I
112 114anti-parallel
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There are 3 strands in IC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
118 119first strand
Strand 2
I
126 127anti-parallel
Strand 3
I
133 135anti-parallel
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There are 2 strands in ID sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
205 207first strand
Strand 2
I
350 359anti-parallel
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There are 2 strands in IE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
212 216first strand
Strand 2
I
350 359anti-parallel
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There are 8 strands in IF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
428 431first strand
Strand 2
I
262 266anti-parallel
Strand 3
I
273 277anti-parallel
Strand 4
I
320 326anti-parallel
Strand 5
I
330 333anti-parallel
Strand 6
I
338 344anti-parallel
Strand 7
I
350 359anti-parallel
Strand 8
I
212 216anti-parallel
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There are 8 strands in IG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
428 431first strand
Strand 2
I
262 266anti-parallel
Strand 3
I
273 277anti-parallel
Strand 4
I
320 326anti-parallel
Strand 5
I
330 333anti-parallel
Strand 6
I
338 344anti-parallel
Strand 7
I
350 359anti-parallel
Strand 8
I
205 207anti-parallel
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There are 6 strands in JA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
80 84first strand
Strand 2
J
50 59anti-parallel
Strand 3
J
165 174parallel
Strand 4
J
144 158anti-parallel
Strand 5
J
127 140anti-parallel
Strand 6
J
109 121anti-parallel
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There are 3 strands in KA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
28 29first strand
Strand 2
K
34 35anti-parallel
Strand 3
K
409 410anti-parallel
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There are 7 strands in KB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
59 63first strand
Strand 2
K
171 175anti-parallel
Strand 3
K
162 168anti-parallel
Strand 4
K
93 97anti-parallel
Strand 5
K
81 87anti-parallel
Strand 6
K
72 78anti-parallel
Strand 7
K
112 114anti-parallel
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There are 3 strands in KC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
118 119first strand
Strand 2
K
126 127anti-parallel
Strand 3
K
133 135anti-parallel
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There are 8 strands in KD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
205 216first strand
Strand 2
K
350 359anti-parallel
Strand 3
K
338 344anti-parallel
Strand 4
K
330 332anti-parallel
Strand 5
K
319 326anti-parallel
Strand 6
K
273 278anti-parallel
Strand 7
K
262 266anti-parallel
Strand 8
K
428 431anti-parallel
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There are 6 strands in LA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
80 84first strand
Strand 2
L
50 59anti-parallel
Strand 3
L
165 174parallel
Strand 4
L
144 158anti-parallel
Strand 5
L
127 140anti-parallel
Strand 6
L
109 121anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il