Analysis of interatomic Contacts of Structural Units in PDB entry:
2YFT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YFT entry

There is 1 chain in PDB entry 2YFT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 176VAL 694
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 2YFT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
181 190Right-handed alpha
Helix 2
2
A
193 197Right-handed 310
Helix 3
3
A
198 206Right-handed alpha
Helix 4
4
A
221 235Right-handed alpha
Helix 5
5
A
245 249Right-handed 310
Helix 6
6
A
252 254Right-handed 310
Helix 7
7
A
318 322Right-handed 310
Helix 8
8
A
381 384Right-handed 310
Helix 9
9
A
407 415Right-handed alpha
Helix 10
10
A
451 456Right-handed 310
Helix 11
11
A
458 461Right-handed 310
Helix 12
12
A
464 478Right-handed alpha
Helix 13
13
A
478 488Right-handed alpha
Helix 14
14
A
548 560Right-handed alpha
Helix 15
15
A
669 672Right-handed 310
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There are 13 sheets in PDB entry 2YFT. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 219first strand
Strand 2
A
514 515parallel
Strand 3
A
490 497anti-parallel
Strand 4
A
506 509anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 219first strand
Strand 2
A
514 515parallel
Strand 3
A
490 497anti-parallel
Strand 4
A
436 443anti-parallel
Strand 5
A
424 430anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
506 509first strand
Strand 2
A
490 497anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 258first strand
Strand 2
A
265 267anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 275first strand
Strand 2
A
290 298anti-parallel
Strand 3
A
306 313anti-parallel
Strand 4
A
323 327anti-parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 345first strand
Strand 2
A
351 359anti-parallel
Strand 3
A
367 380anti-parallel
Strand 4
A
385 398anti-parallel
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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
524 531first strand
Strand 2
A
534 542anti-parallel
Strand 3
A
563 570anti-parallel
Strand 4
A
578 579parallel
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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
524 531first strand
Strand 2
A
534 542anti-parallel
Strand 3
A
563 570anti-parallel
Strand 4
A
585 588anti-parallel
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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
578 579first strand
Strand 2
A
563 570parallel
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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
599 607first strand
Strand 2
A
610 620anti-parallel
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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
634 635first strand
Strand 2
A
610 620parallel
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There are 4 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
648 658first strand
Strand 2
A
637 644anti-parallel
Strand 3
A
610 620anti-parallel
Strand 4
A
634 635parallel
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There are 4 strands in AM sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
648 658first strand
Strand 2
A
637 644anti-parallel
Strand 3
A
610 620anti-parallel
Strand 4
A
599 607anti-parallel
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