Analysis of interatomic Contacts of Structural Units in PDB entry:
2YG1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YG1 entry

There are 2 chains in PDB entry 2YG1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 2ALA 440
B
 GLN 2ALA 440
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 2YG1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
36 39Right-handed 310
Helix 2
2
A
63 71Right-handed alpha
Helix 3
3
A
77 83Right-handed alpha
Helix 4
4
A
166 170Right-handed 310
Helix 5
5
A
241 246Right-handed 310
Helix 6
6
A
247 251Right-handed 310
Helix 7
7
A
334 346Right-handed alpha
Helix 8
8
A
349 354Right-handed alpha
Helix 9
9
A
355 367Right-handed alpha
Helix 10
10
A
382 387Right-handed alpha
Helix 11
11
A
411 419Right-handed alpha
Helix 12
12
B
36 39Right-handed 310
Helix 13
13
B
63 71Right-handed alpha
Helix 14
14
B
77 83Right-handed alpha
Helix 15
15
B
165 170Right-handed 310
Helix 16
16
B
241 246Right-handed 310
Helix 17
17
B
247 251Right-handed 310
Helix 18
18
B
334 345Right-handed alpha
Helix 19
19
B
349 354Right-handed alpha
Helix 20
20
B
355 367Right-handed alpha
Helix 21
21
B
382 387Right-handed alpha
Helix 22
22
B
411 419Right-handed alpha
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There are 17 sheets in PDB entry 2YG1. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, BA, BB, BC, BD, BE, BF, BG, BH,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
72 73parallel
Strand 3
A
41 42anti-parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 87first strand
Strand 2
A
90 94anti-parallel
Strand 3
A
423 433anti-parallel
Strand 4
A
127 134anti-parallel
Strand 5
A
286 294anti-parallel
Strand 6
A
303 312anti-parallel
Strand 7
A
315 318anti-parallel
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There are 10 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 87first strand
Strand 2
A
90 94anti-parallel
Strand 3
A
423 433anti-parallel
Strand 4
A
13 19parallel
Strand 5
A
25 34anti-parallel
Strand 6
A
107 112anti-parallel
Strand 7
A
369 376anti-parallel
Strand 8
A
142 149anti-parallel
Strand 9
A
214 220anti-parallel
Strand 10
A
225 230anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 52first strand
Strand 2
A
55 56anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 98first strand
Strand 2
A
103 105anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 185first strand
Strand 2
A
188 189anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 196first strand
Strand 2
A
204 205anti-parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 211first strand
Strand 2
A
238 240anti-parallel
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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 275first strand
Strand 2
A
280 281parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 3first strand
Strand 2
B
72 73parallel
Strand 3
B
41 42anti-parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 87first strand
Strand 2
B
90 94anti-parallel
Strand 3
B
423 432anti-parallel
Strand 4
B
127 134anti-parallel
Strand 5
B
286 294anti-parallel
Strand 6
B
303 312anti-parallel
Strand 7
B
315 318anti-parallel
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There are 10 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 87first strand
Strand 2
B
90 94anti-parallel
Strand 3
B
423 432anti-parallel
Strand 4
B
13 19parallel
Strand 5
B
25 34anti-parallel
Strand 6
B
107 112anti-parallel
Strand 7
B
368 375anti-parallel
Strand 8
B
143 149anti-parallel
Strand 9
B
214 220anti-parallel
Strand 10
B
225 230anti-parallel
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There are 8 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 87first strand
Strand 2
B
90 94anti-parallel
Strand 3
B
423 432anti-parallel
Strand 4
B
13 19parallel
Strand 5
B
25 34anti-parallel
Strand 6
B
107 112anti-parallel
Strand 7
B
368 375anti-parallel
Strand 8
B
121 122anti-parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 98first strand
Strand 2
B
103 105anti-parallel
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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 185first strand
Strand 2
B
188 189anti-parallel
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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 211first strand
Strand 2
B
238 240anti-parallel
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There are 2 strands in BH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
274 275first strand
Strand 2
B
280 281parallel
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