Analysis of interatomic Contacts of Structural Units in PDB entry:
2YG5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YG5 entry

There is 1 chain in PDB entry 2YG5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2SER 451
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 2YG5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 27Right-handed alpha
Helix 2
2
A
65 75Right-handed alpha
Helix 3
3
A
108 130Right-handed alpha
Helix 4
4
A
133 137Right-handed 310
Helix 5
5
A
139 145Right-handed alpha
Helix 6
6
A
147 156Right-handed alpha
Helix 7
7
A
158 170Right-handed alpha
Helix 8
8
A
171 175Right-handed alpha
Helix 9
9
A
182 193Right-handed alpha
Helix 10
10
A
195 201Right-handed alpha
Helix 11
11
A
201 206Right-handed alpha
Helix 12
12
A
214 226Right-handed alpha
Helix 13
13
A
265 272Right-handed 310
Helix 14
14
A
279 286Right-handed alpha
Helix 15
15
A
304 309Right-handed 310
Helix 16
16
A
344 353Right-handed alpha
Helix 17
17
A
354 371Right-handed alpha
Helix 18
18
A
372 376Right-handed 310
Helix 19
19
A
402 408Right-handed alpha
Helix 20
20
A
409 411Right-handed 310
Helix 21
21
A
422 426Right-handed 310
Helix 22
22
A
432 451Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 2YG5. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 230first strand
Strand 2
A
31 34parallel
Strand 3
A
3 11parallel
Strand 4
A
253 262parallel
Strand 5
A
418 420anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 230first strand
Strand 2
A
31 34parallel
Strand 3
A
3 11parallel
Strand 4
A
253 262parallel
Strand 5
A
244 249anti-parallel
Strand 6
A
235 241anti-parallel
Strand 7
A
273 275parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
418 420first strand
Strand 2
A
253 262anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 49first strand
Strand 2
A
52 55anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 81first strand
Strand 2
A
208 210anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 100first strand
Strand 2
A
87 91anti-parallel
Strand 3
A
311 316parallel
Strand 4
A
324 327anti-parallel
Strand 5
A
336 343anti-parallel
Strand 6
A
294 301anti-parallel
Strand 7
A
379 382anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 291first strand
Strand 2
A
397 399anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il