Analysis of interatomic Contacts of Structural Units in PDB entry:
2YG7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YG7 entry

There are 2 chains in PDB entry 2YG7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2SER 451
B
 PRO 2SER 451
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 2YG7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 27Right-handed alpha
Helix 2
2
A
65 75Right-handed alpha
Helix 3
3
A
108 130Right-handed alpha
Helix 4
4
A
133 137Right-handed 310
Helix 5
5
A
139 145Right-handed alpha
Helix 6
6
A
147 156Right-handed alpha
Helix 7
7
A
158 170Right-handed alpha
Helix 8
8
A
171 175Right-handed alpha
Helix 9
9
A
182 193Right-handed alpha
Helix 10
10
A
195 201Right-handed alpha
Helix 11
11
A
201 206Right-handed alpha
Helix 12
12
A
214 224Right-handed alpha
Helix 13
13
A
225 227Right-handed 310
Helix 14
14
A
265 272Right-handed 310
Helix 15
15
A
279 286Right-handed alpha
Helix 16
16
A
304 309Right-handed 310
Helix 17
17
A
344 352Right-handed alpha
Helix 18
18
A
354 371Right-handed alpha
Helix 19
19
A
372 376Right-handed 310
Helix 20
20
A
402 408Right-handed alpha
Helix 21
21
A
409 411Right-handed 310
Helix 22
22
A
422 426Right-handed 310
Helix 23
23
A
432 451Right-handed alpha
Helix 24
24
B
14 27Right-handed alpha
Helix 25
25
B
65 75Right-handed alpha
Helix 26
26
B
108 130Right-handed alpha
Helix 27
27
B
133 137Right-handed 310
Helix 28
28
B
139 145Right-handed alpha
Helix 29
29
B
147 156Right-handed alpha
Helix 30
30
B
158 170Right-handed alpha
Helix 31
31
B
171 175Right-handed alpha
Helix 32
32
B
182 193Right-handed alpha
Helix 33
33
B
195 201Right-handed alpha
Helix 34
34
B
201 206Right-handed alpha
Helix 35
35
B
214 224Right-handed alpha
Helix 36
36
B
225 227Right-handed 310
Helix 37
37
B
265 272Right-handed 310
Helix 38
38
B
279 286Right-handed alpha
Helix 39
39
B
304 309Right-handed 310
Helix 40
40
B
344 352Right-handed alpha
Helix 41
41
B
354 371Right-handed alpha
Helix 42
42
B
372 376Right-handed 310
Helix 43
43
B
402 408Right-handed alpha
Helix 44
44
B
409 411Right-handed 310
Helix 45
45
B
422 426Right-handed 310
Helix 46
46
B
432 451Right-handed alpha
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There are 14 sheets in PDB entry 2YG7. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, BA, BB, BC, BD, BE, BF, BG,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 230first strand
Strand 2
A
31 34parallel
Strand 3
A
3 11parallel
Strand 4
A
253 262parallel
Strand 5
A
418 420anti-parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 230first strand
Strand 2
A
31 34parallel
Strand 3
A
3 11parallel
Strand 4
A
253 262parallel
Strand 5
A
244 249anti-parallel
Strand 6
A
235 241anti-parallel
Strand 7
A
273 275parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
418 420first strand
Strand 2
A
253 262anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 49first strand
Strand 2
A
52 55anti-parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
208 210anti-parallel
Strand 3
A
79 81anti-parallel
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There are 7 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 100first strand
Strand 2
A
87 91anti-parallel
Strand 3
A
311 316parallel
Strand 4
A
324 327anti-parallel
Strand 5
A
336 343anti-parallel
Strand 6
A
294 301anti-parallel
Strand 7
A
379 382anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 291first strand
Strand 2
A
397 399anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 230first strand
Strand 2
B
31 34parallel
Strand 3
B
3 11parallel
Strand 4
B
253 262parallel
Strand 5
B
418 420anti-parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 230first strand
Strand 2
B
31 34parallel
Strand 3
B
3 11parallel
Strand 4
B
253 262parallel
Strand 5
B
244 249anti-parallel
Strand 6
B
235 241anti-parallel
Strand 7
B
273 275parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
418 420first strand
Strand 2
B
253 262anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 49first strand
Strand 2
B
52 55anti-parallel
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There are 3 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 61first strand
Strand 2
B
208 210anti-parallel
Strand 3
B
79 81anti-parallel
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There are 7 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 100first strand
Strand 2
B
87 91anti-parallel
Strand 3
B
311 316parallel
Strand 4
B
324 327anti-parallel
Strand 5
B
336 343anti-parallel
Strand 6
B
294 301anti-parallel
Strand 7
B
379 382anti-parallel
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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
289 291first strand
Strand 2
B
397 399anti-parallel
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