Analysis of interatomic Contacts of Structural Units in PDB entry:
2YGC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2YGC entry

There are 3 chains in PDB entry 2YGC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 2	MSE 547
B	ASN 2	MSE 547
C	ASN 2	PHE 184

There are 46 helices in PDB entry 2YGC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	2	10	Right-handed alpha
Helix 2	2	A	47	51	Right-handed 310
Helix 3	3	A	89	94	Right-handed alpha
Helix 4	4	A	112	120	Right-handed alpha
Helix 5	5	A	122	129	Right-handed alpha
Helix 6	6	A	132	137	Right-handed alpha
Helix 7	7	A	186	190	Right-handed alpha
Helix 8	8	A	198	206	Right-handed alpha
Helix 9	9	A	279	295	Right-handed alpha
Helix 10	10	A	391	395	Right-handed 310
Helix 11	11	A	396	401	Right-handed alpha
Helix 12	12	A	413	419	Right-handed alpha
Helix 13	13	A	458	469	Right-handed alpha
Helix 14	14	A	495	499	Right-handed 310
Helix 15	15	A	516	521	Right-handed 310
Helix 16	16	B	2	10	Right-handed alpha
Helix 17	17	B	47	50	Right-handed 310
Helix 18	18	B	89	94	Right-handed alpha
Helix 19	19	B	112	120	Right-handed alpha
Helix 20	20	B	122	129	Right-handed alpha
Helix 21	21	B	132	137	Right-handed alpha
Helix 22	22	B	165	169	Right-handed 310
Helix 23	23	B	186	189	Right-handed 310
Helix 24	24	B	198	206	Right-handed alpha
Helix 25	25	B	279	295	Right-handed alpha
Helix 26	26	B	391	395	Right-handed 310
Helix 27	27	B	396	401	Right-handed alpha
Helix 28	28	B	413	419	Right-handed alpha
Helix 29	29	B	458	469	Right-handed alpha
Helix 30	30	B	495	499	Right-handed 310
Helix 31	31	B	516	521	Right-handed 310
Helix 32	32	C	2	10	Right-handed alpha
Helix 33	33	C	89	94	Right-handed alpha
Helix 34	34	C	112	120	Right-handed alpha
Helix 35	35	C	122	129	Right-handed alpha
Helix 36	36	C	132	137	Right-handed alpha
Helix 37	37	C	165	169	Right-handed 310
Helix 38	38	C	186	190	Right-handed alpha
Helix 39	39	C	198	206	Right-handed alpha
Helix 40	40	C	279	295	Right-handed alpha
Helix 41	41	C	391	395	Right-handed 310
Helix 42	42	C	396	401	Right-handed alpha
Helix 43	43	C	413	419	Right-handed alpha
Helix 44	44	C	458	469	Right-handed alpha
Helix 45	45	C	495	499	Right-handed 310
Helix 46	46	C	516	521	Right-handed 310

There are 43 sheets in PDB entry 2YGC. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL, BM, BN, CA, CB, CC, CD, CE, CF, CG, CH, CI, CJ, CK, CL, CM, CN,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	40	first strand
Strand 2	A	210	219	anti-parallel
Strand 3	A	65	75	anti-parallel
Strand 4	A	152	158	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	40	first strand
Strand 2	A	210	219	anti-parallel
Strand 3	A	65	75	anti-parallel
Strand 4	A	171	172	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	158	first strand
Strand 2	A	65	75	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	44	first strand
Strand 2	A	53	58	anti-parallel
Strand 3	A	178	184	anti-parallel
Strand 4	A	95	102	anti-parallel
Strand 5	A	105	111	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	79	first strand
Strand 2	A	147	149	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	140	first strand
Strand 2	A	83	86	anti-parallel
Strand 3	A	191	193	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	236	first strand
Strand 2	A	522	536	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	478	first strand
Strand 2	A	251	262	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	492	493	first strand
Strand 2	A	251	262	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	542	545	first strand
Strand 2	A	522	536	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	246	first strand
Strand 2	A	503	509	anti-parallel
Strand 3	A	440	447	anti-parallel
Strand 4	A	450	455	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	270	first strand
Strand 2	A	421	422	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	299	first strand
Strand 2	A	340	344	anti-parallel
Strand 3	A	312	314	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	320	323	first strand
Strand 2	A	326	333	anti-parallel
Strand 3	A	365	373	parallel
Strand 4	A	378	386	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	350	first strand
Strand 2	A	359	360	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	40	first strand
Strand 2	B	210	219	anti-parallel
Strand 3	B	65	75	anti-parallel
Strand 4	B	152	158	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	40	first strand
Strand 2	B	210	219	anti-parallel
Strand 3	B	65	75	anti-parallel
Strand 4	B	171	172	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	158	first strand
Strand 2	B	65	75	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	45	first strand
Strand 2	B	52	58	anti-parallel
Strand 3	B	178	184	anti-parallel
Strand 4	B	95	102	anti-parallel
Strand 5	B	105	111	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	79	first strand
Strand 2	B	147	149	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	140	first strand
Strand 2	B	83	86	anti-parallel
Strand 3	B	191	193	anti-parallel
Strand 4	B	421	423	anti-parallel
Strand 5	B	269	270	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	236	first strand
Strand 2	B	522	536	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	478	first strand
Strand 2	B	251	262	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in BI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	492	493	first strand
Strand 2	B	251	262	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in BJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	542	545	first strand
Strand 2	B	522	536	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in BK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	246	first strand
Strand 2	B	503	509	anti-parallel
Strand 3	B	440	447	anti-parallel
Strand 4	B	450	455	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in BL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	299	first strand
Strand 2	B	340	344	anti-parallel
Strand 3	B	312	314	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in BM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	320	323	first strand
Strand 2	B	326	333	anti-parallel
Strand 3	B	365	373	parallel
Strand 4	B	378	386	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in BN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	349	350	first strand
Strand 2	B	359	360	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	40	first strand
Strand 2	C	210	219	anti-parallel
Strand 3	C	65	75	anti-parallel
Strand 4	C	152	158	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	40	first strand
Strand 2	C	210	219	anti-parallel
Strand 3	C	65	75	anti-parallel
Strand 4	C	171	172	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	158	first strand
Strand 2	C	65	75	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	44	first strand
Strand 2	C	53	58	anti-parallel
Strand 3	C	178	184	anti-parallel
Strand 4	C	95	102	anti-parallel
Strand 5	C	105	111	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	79	first strand
Strand 2	C	147	149	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in CF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	140	first strand
Strand 2	C	83	86	anti-parallel
Strand 3	C	191	193	anti-parallel
Strand 4	C	421	423	anti-parallel
Strand 5	C	269	270	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in CG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	227	236	first strand
Strand 2	C	522	536	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in CH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	475	478	first strand
Strand 2	C	251	262	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in CI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	492	493	first strand
Strand 2	C	251	262	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in CJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	542	545	first strand
Strand 2	C	522	536	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in CK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	243	246	first strand
Strand 2	C	503	509	anti-parallel
Strand 3	C	440	447	anti-parallel
Strand 4	C	450	455	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in CL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	299	first strand
Strand 2	C	340	344	anti-parallel
Strand 3	C	312	314	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in CM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	320	323	first strand
Strand 2	C	326	333	anti-parallel
Strand 3	C	365	373	parallel
Strand 4	C	378	386	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in CN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	349	350	first strand
Strand 2	C	359	360	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2YGC

Analysis of interatomic Contacts of Structural Units in PDB entry:
2YGC