Analysis of interatomic Contacts of Structural Units in PDB entry:
2YGL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YGL entry

There are 2 chains in PDB entry 2YGL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 62ASN 412
B
 HIS 62ALA 411
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 2YGL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
69 71Right-handed 310
Helix 2
2
A
92 99Right-handed alpha
Helix 3
3
A
109 111Right-handed 310
Helix 4
4
A
237 244Right-handed alpha
Helix 5
5
A
252 254Right-handed 310
Helix 6
6
A
275 281Right-handed alpha
Helix 7
7
B
69 71Right-handed 310
Helix 8
8
B
92 98Right-handed alpha
Helix 9
9
B
109 111Right-handed 310
Helix 10
10
B
237 244Right-handed alpha
Helix 11
11
B
252 254Right-handed 310
Helix 12
12
B
275 281Right-handed alpha
Back to top of page

There are 20 sheets in PDB entry 2YGL. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 67first strand
Strand 2
A
219 230parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 89first strand
Strand 2
A
119 123anti-parallel
Strand 3
A
219 230anti-parallel
Strand 4
A
141 148anti-parallel
Strand 5
A
192 197anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 89first strand
Strand 2
A
119 123anti-parallel
Strand 3
A
219 230anti-parallel
Strand 4
A
63 67parallel
Back to list of sheets
Back to top of page

There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 76first strand
Strand 2
A
128 133anti-parallel
Strand 3
A
204 210anti-parallel
Strand 4
A
164 169anti-parallel
Strand 5
A
172 176anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 107first strand
Strand 2
A
113 116anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 250first strand
Strand 2
A
402 411parallel
Back to list of sheets
Back to top of page

There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 272first strand
Strand 2
A
301 303anti-parallel
Strand 3
A
402 411anti-parallel
Strand 4
A
321 330anti-parallel
Strand 5
A
374 379anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 272first strand
Strand 2
A
301 303anti-parallel
Strand 3
A
402 411anti-parallel
Strand 4
A
248 250parallel
Back to list of sheets
Back to top of page

There are 5 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 259first strand
Strand 2
A
310 315anti-parallel
Strand 3
A
386 393anti-parallel
Strand 4
A
344 351anti-parallel
Strand 5
A
354 358anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 291first strand
Strand 2
A
294 298anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 67first strand
Strand 2
B
220 230parallel
Back to list of sheets
Back to top of page

There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 89first strand
Strand 2
B
119 121anti-parallel
Strand 3
B
220 230anti-parallel
Strand 4
B
141 148anti-parallel
Strand 5
B
192 197anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 89first strand
Strand 2
B
119 121anti-parallel
Strand 3
B
220 230anti-parallel
Strand 4
B
63 67parallel
Back to list of sheets
Back to top of page

There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 76first strand
Strand 2
B
128 133anti-parallel
Strand 3
B
204 210anti-parallel
Strand 4
B
164 169anti-parallel
Strand 5
B
172 176anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 107first strand
Strand 2
B
113 116anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 250first strand
Strand 2
B
401 410parallel
Back to list of sheets
Back to top of page

There are 5 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
271 272first strand
Strand 2
B
301 305anti-parallel
Strand 3
B
401 410anti-parallel
Strand 4
B
323 329anti-parallel
Strand 5
B
374 379anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in BH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
271 272first strand
Strand 2
B
301 305anti-parallel
Strand 3
B
401 410anti-parallel
Strand 4
B
248 250parallel
Back to list of sheets
Back to top of page

There are 5 strands in BI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
258 259first strand
Strand 2
B
310 315anti-parallel
Strand 3
B
386 393anti-parallel
Strand 4
B
344 351anti-parallel
Strand 5
B
354 358anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
287 291first strand
Strand 2
B
294 298anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il