Analysis of interatomic Contacts of Structural Units in PDB entry:
2YGM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YGM entry

There are 2 chains in PDB entry 2YGM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 62ASN 412
B
 SER 61ASN 412
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 2YGM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
69 71Right-handed 310
Helix 2
AA2
A
92 98Right-handed alpha
Helix 3
AA3
A
237 244Right-handed alpha
Helix 4
AA4
A
252 254Right-handed 310
Helix 5
AA5
A
275 281Right-handed alpha
Helix 6
AA6
A
360 362Right-handed 310
Helix 7
AA7
B
69 71Right-handed 310
Helix 8
AA8
B
92 99Right-handed alpha
Helix 9
AA9
B
237 244Right-handed alpha
Helix 10
AB1
B
252 254Right-handed 310
Helix 11
AB2
B
275 281Right-handed alpha
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There are 15 sheets in PDB entry 2YGM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 67first strand
Strand 2
A
220 230anti-parallel
Strand 3
A
119 121anti-parallel
Strand 4
A
88 89anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 67first strand
Strand 2
A
220 230anti-parallel
Strand 3
A
141 148anti-parallel
Strand 4
A
192 197anti-parallel
Strand 5
B
75 76anti-parallel
Strand 6
B
128 133anti-parallel
Strand 7
B
204 210anti-parallel
Strand 8
B
164 169anti-parallel
Strand 9
B
172 176anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 76first strand
Strand 2
A
128 133anti-parallel
Strand 3
A
204 210anti-parallel
Strand 4
A
164 169anti-parallel
Strand 5
A
172 176anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 107first strand
Strand 2
A
113 116anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 250first strand
Strand 2
A
401 411anti-parallel
Strand 3
A
301 305anti-parallel
Strand 4
A
271 272anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 250first strand
Strand 2
A
401 411anti-parallel
Strand 3
A
321 329anti-parallel
Strand 4
A
374 379anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 259first strand
Strand 2
A
310 315anti-parallel
Strand 3
A
386 393anti-parallel
Strand 4
A
344 351anti-parallel
Strand 5
A
354 358anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 291first strand
Strand 2
A
294 298anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 67first strand
Strand 2
B
220 231anti-parallel
Strand 3
B
119 121anti-parallel
Strand 4
B
88 89anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 67first strand
Strand 2
B
220 231anti-parallel
Strand 3
B
141 148anti-parallel
Strand 4
B
192 197anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 107first strand
Strand 2
B
113 116anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 250first strand
Strand 2
B
401 411anti-parallel
Strand 3
B
301 305anti-parallel
Strand 4
B
271 272anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 250first strand
Strand 2
B
401 411anti-parallel
Strand 3
B
321 329anti-parallel
Strand 4
B
374 379anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
258 259first strand
Strand 2
B
310 315anti-parallel
Strand 3
B
386 393anti-parallel
Strand 4
B
344 351anti-parallel
Strand 5
B
355 358anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
287 291first strand
Strand 2
B
294 298anti-parallel
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