Analysis of interatomic Contacts of Structural Units in PDB entry:
2YGV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YGV entry

There are 8 chains in PDB entry 2YGV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ASN 155
B
 MET 1ASN 155
C
 MET 1ASN 155
D
 MET 1ASP 154
E
 VAL 162SER 180
F
 VAL 162SER 180
G
 LYS 161SER 180
H
 VAL 162SER 180
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 2YGV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
80 84Right-handed 310
Helix 2
2
A
119 125Right-handed alpha
Helix 3
3
A
131 133Right-handed 310
Helix 4
4
B
131 133Right-handed 310
Helix 5
5
C
80 84Right-handed 310
Helix 6
6
C
119 125Right-handed alpha
Helix 7
7
C
131 133Right-handed 310
Helix 8
8
D
80 84Right-handed 310
Helix 9
9
D
119 125Right-handed alpha
Helix 10
10
D
131 133Right-handed 310
Helix 11
11
E
171 173Right-handed 310
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There are 16 sheets in PDB entry 2YGV. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC, CD, A, DB, C, DD,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 11first strand
Strand 2
A
22 30anti-parallel
Strand 3
A
68 76anti-parallel
Strand 4
E
168 169anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
135 139parallel
Strand 3
A
104 117parallel
Strand 4
A
145 148anti-parallel
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There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
135 139parallel
Strand 3
A
104 117parallel
Strand 4
A
92 101anti-parallel
Strand 5
A
38 45anti-parallel
Strand 6
A
55 62anti-parallel
Strand 7
E
163 165parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 148first strand
Strand 2
A
104 117anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 11first strand
Strand 2
B
22 30anti-parallel
Strand 3
B
68 76anti-parallel
Strand 4
F
168 169anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 17first strand
Strand 2
B
135 139parallel
Strand 3
B
104 117parallel
Strand 4
B
145 148anti-parallel
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There are 7 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 17first strand
Strand 2
B
135 139parallel
Strand 3
B
104 117parallel
Strand 4
B
92 101anti-parallel
Strand 5
B
38 45anti-parallel
Strand 6
B
55 62anti-parallel
Strand 7
F
164 165parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 148first strand
Strand 2
B
104 117anti-parallel
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There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 11first strand
Strand 2
C
22 30anti-parallel
Strand 3
C
68 76anti-parallel
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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
16 17first strand
Strand 2
C
135 139parallel
Strand 3
C
104 117parallel
Strand 4
C
145 148anti-parallel
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There are 7 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
16 17first strand
Strand 2
C
135 139parallel
Strand 3
C
104 117parallel
Strand 4
C
92 101anti-parallel
Strand 5
C
38 45anti-parallel
Strand 6
C
55 62anti-parallel
Strand 7
G
164 165parallel
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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
145 148first strand
Strand 2
C
104 117anti-parallel
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There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 11first strand
Strand 2
D
22 30anti-parallel
Strand 3
D
68 76anti-parallel
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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
16 17first strand
Strand 2
D
135 139parallel
Strand 3
D
104 117parallel
Strand 4
D
145 148anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
16 17first strand
Strand 2
D
135 139parallel
Strand 3
D
104 117parallel
Strand 4
D
92 101anti-parallel
Strand 5
D
38 45anti-parallel
Strand 6
D
55 62anti-parallel
Strand 7
H
164 165parallel
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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
145 148first strand
Strand 2
D
104 117anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il