Analysis of interatomic Contacts of Structural Units in PDB entry:
2YGW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YGW entry

There are 2 chains in PDB entry 2YGW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -9GLN 488
B
 GLN -2PHE 487
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 50 helices in PDB entry 2YGW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-8 48Right-handed alpha
Helix 2
2
A
53 57Right-handed 310
Helix 3
3
A
66 77Right-handed alpha
Helix 4
4
A
80 95Right-handed alpha
Helix 5
5
A
98 113Right-handed alpha
Helix 6
6
A
118 133Right-handed alpha
Helix 7
7
A
137 146Right-handed alpha
Helix 8
8
A
149 167Right-handed alpha
Helix 9
9
A
172 190Right-handed alpha
Helix 10
10
A
191 193Right-handed 310
Helix 11
11
A
205 215Right-handed alpha
Helix 12
12
A
223 231Right-handed alpha
Helix 13
13
A
265 270Right-handed alpha
Helix 14
14
A
295 299Right-handed 310
Helix 15
15
A
302 319Right-handed alpha
Helix 16
16
A
333 342Right-handed alpha
Helix 17
17
A
373 380Right-handed alpha
Helix 18
18
A
382 386Right-handed 310
Helix 19
19
A
387 394Right-handed alpha
Helix 20
20
A
394 408Right-handed alpha
Helix 21
21
A
417 426Right-handed alpha
Helix 22
22
A
440 448Right-handed alpha
Helix 23
23
A
457 459Right-handed 310
Helix 24
24
A
460 472Right-handed alpha
Helix 25
25
A
477 487Right-handed alpha
Helix 26
26
B
-2 48Right-handed alpha
Helix 27
27
B
53 57Right-handed 310
Helix 28
28
B
62 77Right-handed alpha
Helix 29
29
B
80 95Right-handed alpha
Helix 30
30
B
98 115Right-handed alpha
Helix 31
31
B
118 133Right-handed alpha
Helix 32
32
B
137 146Right-handed alpha
Helix 33
33
B
149 167Right-handed alpha
Helix 34
34
B
172 190Right-handed alpha
Helix 35
35
B
191 193Right-handed 310
Helix 36
36
B
205 215Right-handed alpha
Helix 37
37
B
223 232Right-handed alpha
Helix 38
38
B
265 270Right-handed alpha
Helix 39
39
B
295 299Right-handed 310
Helix 40
40
B
302 319Right-handed alpha
Helix 41
41
B
333 342Right-handed alpha
Helix 42
42
B
374 380Right-handed alpha
Helix 43
43
B
382 386Right-handed 310
Helix 44
44
B
387 394Right-handed alpha
Helix 45
45
B
394 408Right-handed alpha
Helix 46
46
B
417 426Right-handed alpha
Helix 47
47
B
440 448Right-handed alpha
Helix 48
48
B
457 459Right-handed 310
Helix 49
49
B
460 472Right-handed alpha
Helix 50
50
B
477 487Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 2YGW. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 200first strand
Strand 2
A
235 242anti-parallel
Strand 3
A
251 258anti-parallel
Strand 4
A
285 293anti-parallel
Strand 5
A
324 327parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 411first strand
Strand 2
A
414 415anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
429 434first strand
Strand 2
A
451 455anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
195 200first strand
Strand 2
B
235 242anti-parallel
Strand 3
B
251 258anti-parallel
Strand 4
B
285 293anti-parallel
Strand 5
B
324 327parallel
Strand 6
B
451 456anti-parallel
Strand 7
B
429 434anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
410 411first strand
Strand 2
B
414 415anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il