Analysis of interatomic Contacts of Structural Units in PDB entry:
2YH2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YH2 entry

There are 4 chains in PDB entry 2YH2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 313
B
 PRO 2ALA 313
C
 PRO 2ALA 313
D
 PRO 2ALA 313
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 58 helices in PDB entry 2YH2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 12Right-handed alpha
Helix 2
2
A
25 45Right-handed alpha
Helix 3
3
A
95 107Right-handed alpha
Helix 4
4
A
124 140Right-handed alpha
Helix 5
5
A
140 145Right-handed alpha
Helix 6
6
A
157 173Right-handed alpha
Helix 7
7
A
195 201Right-handed alpha
Helix 8
8
A
203 207Right-handed 310
Helix 9
9
A
210 222Right-handed alpha
Helix 10
10
A
224 230Right-handed 310
Helix 11
11
A
234 238Right-handed 310
Helix 12
12
A
256 270Right-handed alpha
Helix 13
13
A
285 290Right-handed 310
Helix 14
14
A
293 310Right-handed alpha
Helix 15
15
B
4 12Right-handed alpha
Helix 16
16
B
25 45Right-handed alpha
Helix 17
17
B
95 107Right-handed alpha
Helix 18
18
B
124 140Right-handed alpha
Helix 19
19
B
140 145Right-handed alpha
Helix 20
20
B
157 173Right-handed alpha
Helix 21
21
B
195 201Right-handed alpha
Helix 22
22
B
203 207Right-handed 310
Helix 23
23
B
210 222Right-handed alpha
Helix 24
24
B
224 230Right-handed 310
Helix 25
25
B
234 238Right-handed 310
Helix 26
26
B
256 270Right-handed alpha
Helix 27
27
B
285 290Right-handed 310
Helix 28
28
B
293 310Right-handed alpha
Helix 29
29
C
4 16Right-handed alpha
Helix 30
30
C
25 45Right-handed alpha
Helix 31
31
C
92 94Right-handed 310
Helix 32
32
C
95 107Right-handed alpha
Helix 33
33
C
124 140Right-handed alpha
Helix 34
34
C
140 145Right-handed alpha
Helix 35
35
C
157 173Right-handed alpha
Helix 36
36
C
195 201Right-handed alpha
Helix 37
37
C
203 207Right-handed 310
Helix 38
38
C
210 222Right-handed alpha
Helix 39
39
C
224 230Right-handed 310
Helix 40
40
C
234 238Right-handed 310
Helix 41
41
C
256 270Right-handed alpha
Helix 42
42
C
285 290Right-handed 310
Helix 43
43
C
293 310Right-handed alpha
Helix 44
44
D
4 13Right-handed alpha
Helix 45
45
D
25 45Right-handed alpha
Helix 46
46
D
92 94Right-handed 310
Helix 47
47
D
95 107Right-handed alpha
Helix 48
48
D
124 140Right-handed alpha
Helix 49
49
D
140 145Right-handed alpha
Helix 50
50
D
157 173Right-handed alpha
Helix 51
51
D
195 201Right-handed alpha
Helix 52
52
D
203 207Right-handed 310
Helix 53
53
D
210 222Right-handed alpha
Helix 54
54
D
224 230Right-handed 310
Helix 55
55
D
234 238Right-handed 310
Helix 56
56
D
256 270Right-handed alpha
Helix 57
57
D
285 290Right-handed 310
Helix 58
58
D
293 310Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 2YH2. Click on sheet of interest to get list of strands forming it: AA, CA,

There are 16 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 58first strand
Strand 2
A
61 69anti-parallel
Strand 3
A
109 114anti-parallel
Strand 4
A
78 82parallel
Strand 5
A
151 156parallel
Strand 6
A
178 184parallel
Strand 7
A
246 253parallel
Strand 8
A
274 283parallel
Strand 9
B
274 283anti-parallel
Strand 10
B
246 253parallel
Strand 11
B
180 184parallel
Strand 12
B
146 156parallel
Strand 13
B
76 82parallel
Strand 14
B
109 114parallel
Strand 15
B
61 69anti-parallel
Strand 16
B
50 58anti-parallel
Back to list of sheets
Back to top of page

There are 16 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 58first strand
Strand 2
C
61 69anti-parallel
Strand 3
C
109 114anti-parallel
Strand 4
C
76 82parallel
Strand 5
C
146 156parallel
Strand 6
C
178 184parallel
Strand 7
C
246 253parallel
Strand 8
C
274 283parallel
Strand 9
D
274 283anti-parallel
Strand 10
D
246 253parallel
Strand 11
D
180 184parallel
Strand 12
D
146 156parallel
Strand 13
D
76 82parallel
Strand 14
D
109 114parallel
Strand 15
D
61 69anti-parallel
Strand 16
D
50 58anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il