Analysis of interatomic Contacts of Structural Units in PDB entry:
2YH6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YH6 entry

There are 4 chains in PDB entry 2YH6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 77LYS 187
B
 GLY 77SER 188
C
 GLY 77LYS 187
D
 GLY 77SER 188
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 2YH6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
91 103Right-handed alpha
Helix 2
2
A
112 114Right-handed 310
Helix 3
3
A
128 131Right-handed 310
Helix 4
4
A
166 185Right-handed alpha
Helix 5
5
B
91 103Right-handed alpha
Helix 6
6
B
112 114Right-handed 310
Helix 7
7
B
166 187Right-handed alpha
Helix 8
8
C
91 103Right-handed alpha
Helix 9
9
C
112 114Right-handed 310
Helix 10
10
C
128 131Right-handed 310
Helix 11
11
C
166 187Right-handed alpha
Helix 12
12
D
91 103Right-handed alpha
Helix 13
13
D
112 114Right-handed 310
Helix 14
14
D
128 131Right-handed 310
Helix 15
15
D
166 187Right-handed alpha
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There are 22 sheets in PDB entry 2YH6. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, AF, BB, BC, BD, BE, CA, CB, CC, CD, CE, A, CF, DB, C, DD, DE,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 111first strand
Strand 2
A
116 119anti-parallel
Strand 3
A
133 144anti-parallel
Strand 4
A
147 159anti-parallel
Strand 5
A
162 164anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 111first strand
Strand 2
A
116 119anti-parallel
Strand 3
A
133 144anti-parallel
Strand 4
A
122 124parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 164first strand
Strand 2
A
147 159anti-parallel
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There are 8 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 111first strand
Strand 2
A
116 119anti-parallel
Strand 3
A
133 144anti-parallel
Strand 4
A
147 159anti-parallel
Strand 5
A
79 84anti-parallel
Strand 6
B
79 84anti-parallel
Strand 7
B
148 159anti-parallel
Strand 8
B
162 163anti-parallel
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There are 9 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 111first strand
Strand 2
A
116 119anti-parallel
Strand 3
A
133 144anti-parallel
Strand 4
A
147 159anti-parallel
Strand 5
A
79 84anti-parallel
Strand 6
B
79 84anti-parallel
Strand 7
B
148 159anti-parallel
Strand 8
B
133 141anti-parallel
Strand 9
B
122 124anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 111first strand
Strand 2
B
116 119anti-parallel
Strand 3
B
133 141anti-parallel
Strand 4
B
148 159anti-parallel
Strand 5
B
162 163anti-parallel
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There are 10 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 111first strand
Strand 2
A
116 119anti-parallel
Strand 3
A
133 144anti-parallel
Strand 4
A
147 159anti-parallel
Strand 5
A
79 84anti-parallel
Strand 6
B
79 84anti-parallel
Strand 7
B
148 159anti-parallel
Strand 8
B
133 141anti-parallel
Strand 9
B
116 119anti-parallel
Strand 10
B
107 111anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 111first strand
Strand 2
B
116 119anti-parallel
Strand 3
B
133 141anti-parallel
Strand 4
B
122 124anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 163first strand
Strand 2
B
148 159anti-parallel
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There are 8 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 111first strand
Strand 2
B
116 119anti-parallel
Strand 3
B
133 141anti-parallel
Strand 4
B
148 159anti-parallel
Strand 5
B
79 84anti-parallel
Strand 6
A
79 84anti-parallel
Strand 7
A
147 159anti-parallel
Strand 8
A
162 164anti-parallel
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There are 9 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 111first strand
Strand 2
B
116 119anti-parallel
Strand 3
B
133 141anti-parallel
Strand 4
B
148 159anti-parallel
Strand 5
B
79 84anti-parallel
Strand 6
A
79 84anti-parallel
Strand 7
A
147 159anti-parallel
Strand 8
A
133 144anti-parallel
Strand 9
A
122 124parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
107 111first strand
Strand 2
C
116 119anti-parallel
Strand 3
C
133 144anti-parallel
Strand 4
C
147 159anti-parallel
Strand 5
C
162 163anti-parallel
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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
107 111first strand
Strand 2
C
116 119anti-parallel
Strand 3
C
133 144anti-parallel
Strand 4
C
122 124parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
162 163first strand
Strand 2
C
147 159anti-parallel
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There are 8 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
107 111first strand
Strand 2
C
116 119anti-parallel
Strand 3
C
133 144anti-parallel
Strand 4
C
147 159anti-parallel
Strand 5
C
79 84anti-parallel
Strand 6
D
79 84anti-parallel
Strand 7
D
147 159anti-parallel
Strand 8
D
162 163anti-parallel
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There are 9 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
107 111first strand
Strand 2
C
116 119anti-parallel
Strand 3
C
133 144anti-parallel
Strand 4
C
147 159anti-parallel
Strand 5
C
79 84anti-parallel
Strand 6
D
79 84anti-parallel
Strand 7
D
147 159anti-parallel
Strand 8
D
133 144anti-parallel
Strand 9
D
122 124anti-parallel
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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
107 111first strand
Strand 2
D
116 119anti-parallel
Strand 3
D
133 144anti-parallel
Strand 4
D
147 159anti-parallel
Strand 5
D
162 163anti-parallel
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There are 10 strands in CF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
107 111first strand
Strand 2
C
116 119anti-parallel
Strand 3
C
133 144anti-parallel
Strand 4
C
147 159anti-parallel
Strand 5
C
79 84anti-parallel
Strand 6
D
79 84anti-parallel
Strand 7
D
147 159anti-parallel
Strand 8
D
133 144anti-parallel
Strand 9
D
116 119anti-parallel
Strand 10
D
107 111anti-parallel
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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
107 111first strand
Strand 2
D
116 119anti-parallel
Strand 3
D
133 144anti-parallel
Strand 4
D
122 124anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
162 163first strand
Strand 2
D
147 159anti-parallel
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There are 8 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
107 111first strand
Strand 2
D
116 119anti-parallel
Strand 3
D
133 144anti-parallel
Strand 4
D
147 159anti-parallel
Strand 5
D
79 84anti-parallel
Strand 6
C
79 84anti-parallel
Strand 7
C
147 159anti-parallel
Strand 8
C
162 163anti-parallel
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There are 9 strands in DE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
107 111first strand
Strand 2
D
116 119anti-parallel
Strand 3
D
133 144anti-parallel
Strand 4
D
147 159anti-parallel
Strand 5
D
79 84anti-parallel
Strand 6
C
79 84anti-parallel
Strand 7
C
147 159anti-parallel
Strand 8
C
133 144anti-parallel
Strand 9
C
122 124parallel
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