Analysis of interatomic Contacts of Structural Units in PDB entry:
2YHA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YHA entry

There is 1 chain in PDB entry 2YHA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 506ILE 938
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 2YHA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
532 545Right-handed alpha
Helix 2
2
A
566 578Right-handed alpha
Helix 3
3
A
592 603Right-handed alpha
Helix 4
4
A
615 619Right-handed alpha
Helix 5
5
A
624 638Right-handed alpha
Helix 6
6
A
651 654Right-handed alpha
Helix 7
7
A
708 728Right-handed alpha
Helix 8
8
A
752 758Right-handed alpha
Helix 9
9
A
760 770Right-handed alpha
Helix 10
10
A
850 854Right-handed alpha
Helix 11
11
A
858 871Right-handed alpha
Helix 12
12
A
884 899Right-handed alpha
Helix 13
13
A
901 907Right-handed alpha
Helix 14
14
A
915 924Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 2YHA. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
558 561first strand
Strand 2
A
518 524parallel
Strand 3
A
582 587parallel
Strand 4
A
609 614parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
699 704first strand
Strand 2
A
682 688anti-parallel
Strand 3
A
658 666anti-parallel
Strand 4
A
739 745parallel
Strand 5
A
778 784parallel
Strand 6
A
842 847anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il