Analysis of interatomic Contacts of Structural Units in PDB entry:
2YHM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2YHM entry

There are 4 chains in PDB entry 2YHM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 375
B	MET 1	LEU 375
C	MET 1	LEU 375
D	MET 1	GLY 157

There are220 helices in PDB entry 2YHM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	2	6	Right-handed 310
Helix 2	2	A	9	20	Right-handed alpha
Helix 3	3	A	37	39	Right-handed 310
Helix 4	4	A	40	54	Right-handed alpha
Helix 5	5	A	61	75	Right-handed alpha
Helix 6	6	A	75	87	Right-handed alpha
Helix 7	7	A	120	143	Right-handed alpha
Helix 8	8	A	155	171	Right-handed alpha
Helix 9	9	A	172	174	Right-handed 310
Helix 10	10	A	175	177	Right-handed 310
Helix 11	11	A	178	190	Right-handed alpha
Helix 12	12	A	190	197	Right-handed alpha
Helix 13	13	A	201	216	Right-handed alpha
Helix 14	14	A	217	232	Right-handed alpha
Helix 15	15	A	237	250	Right-handed alpha
Helix 16	16	A	255	267	Right-handed alpha
Helix 17	17	A	269	273	Right-handed 310
Helix 18	18	A	274	295	Right-handed alpha
Helix 19	19	A	296	301	Right-handed 310
Helix 20	20	A	306	313	Right-handed 310
Helix 21	21	A	317	331	Right-handed alpha
Helix 22	22	A	343	358	Right-handed alpha
Helix 23	23	B	2	6	Right-handed 310
Helix 24	24	B	9	20	Right-handed alpha
Helix 25	25	B	37	39	Right-handed 310
Helix 26	26	B	40	54	Right-handed alpha
Helix 27	27	B	61	75	Right-handed alpha
Helix 28	28	B	75	87	Right-handed alpha
Helix 29	29	B	120	143	Right-handed alpha
Helix 30	30	B	155	171	Right-handed alpha
Helix 31	31	B	172	174	Right-handed 310
Helix 32	32	B	175	177	Right-handed 310
Helix 33	33	B	178	190	Right-handed alpha
Helix 34	34	B	190	197	Right-handed alpha
Helix 35	35	B	201	216	Right-handed alpha
Helix 36	36	B	217	232	Right-handed alpha
Helix 37	37	B	237	250	Right-handed alpha
Helix 38	38	B	255	267	Right-handed alpha
Helix 39	39	B	269	273	Right-handed 310
Helix 40	40	B	274	295	Right-handed alpha
Helix 41	41	B	296	301	Right-handed 310
Helix 42	42	B	306	313	Right-handed 310
Helix 43	43	B	317	331	Right-handed alpha
Helix 44	44	B	343	358	Right-handed alpha
Helix 45	45	C	2	6	Right-handed 310
Helix 46	46	C	9	20	Right-handed alpha
Helix 47	47	C	37	39	Right-handed 310
Helix 48	48	C	40	54	Right-handed alpha
Helix 49	49	C	61	75	Right-handed alpha
Helix 50	50	C	75	87	Right-handed alpha
Helix 51	51	C	120	143	Right-handed alpha
Helix 52	52	C	155	171	Right-handed alpha
Helix 53	53	C	172	174	Right-handed 310
Helix 54	54	C	175	177	Right-handed 310
Helix 55	55	C	178	190	Right-handed alpha
Helix 56	56	C	190	197	Right-handed alpha
Helix 57	57	C	201	216	Right-handed alpha
Helix 58	58	C	217	232	Right-handed alpha
Helix 59	59	C	237	250	Right-handed alpha
Helix 60	60	C	255	267	Right-handed alpha
Helix 61	61	C	269	273	Right-handed 310
Helix 62	62	C	274	295	Right-handed alpha
Helix 63	63	C	296	301	Right-handed 310
Helix 64	64	C	306	313	Right-handed 310
Helix 65	65	C	317	331	Right-handed alpha
Helix 66	66	C	343	358	Right-handed alpha
Helix 67	67	D	2	6	Right-handed 310
Helix 68	68	D	9	20	Right-handed alpha
Helix 69	69	D	37	39	Right-handed 310
Helix 70	70	D	40	54	Right-handed alpha
Helix 71	71	D	61	75	Right-handed alpha
Helix 72	72	D	75	87	Right-handed alpha
Helix 73	73	D	120	143	Right-handed alpha
Helix 74	74	D	155	171	Right-handed alpha
Helix 75	75	D	172	174	Right-handed 310
Helix 76	76	D	175	177	Right-handed 310
Helix 77	77	D	178	190	Right-handed alpha
Helix 78	78	D	190	197	Right-handed alpha
Helix 79	79	D	201	216	Right-handed alpha
Helix 80	80	D	217	232	Right-handed alpha
Helix 81	81	D	237	250	Right-handed alpha
Helix 82	82	D	255	267	Right-handed alpha
Helix 83	83	D	269	273	Right-handed 310
Helix 84	84	D	274	295	Right-handed alpha
Helix 85	85	D	296	301	Right-handed 310
Helix 86	86	D	306	313	Right-handed 310
Helix 87	87	D	317	331	Right-handed alpha
Helix 88	88	D	343	358	Right-handed alpha
Helix 89	89	E	2	6	Right-handed 310
Helix 90	90	E	9	20	Right-handed alpha
Helix 91	91	E	37	39	Right-handed 310
Helix 92	92	E	40	54	Right-handed alpha
Helix 93	93	E	61	75	Right-handed alpha
Helix 94	94	E	75	87	Right-handed alpha
Helix 95	95	E	120	143	Right-handed alpha
Helix 96	96	E	155	171	Right-handed alpha
Helix 97	97	E	172	174	Right-handed 310
Helix 98	98	E	175	177	Right-handed 310
Helix 99	99	E	178	190	Right-handed alpha
Helix 100	100	E	190	197	Right-handed alpha
Helix 101	101	E	201	216	Right-handed alpha
Helix 102	102	E	217	232	Right-handed alpha
Helix 103	103	E	237	250	Right-handed alpha
Helix 104	104	E	255	267	Right-handed alpha
Helix 105	105	E	269	273	Right-handed 310
Helix 106	106	E	274	295	Right-handed alpha
Helix 107	107	E	296	301	Right-handed 310
Helix 108	108	E	306	313	Right-handed 310
Helix 109	109	E	317	331	Right-handed alpha
Helix 110	110	E	343	358	Right-handed alpha
Helix 111	111	F	2	6	Right-handed 310
Helix 112	112	F	9	20	Right-handed alpha
Helix 113	113	F	37	39	Right-handed 310
Helix 114	114	F	40	54	Right-handed alpha
Helix 115	115	F	61	75	Right-handed alpha
Helix 116	116	F	75	87	Right-handed alpha
Helix 117	117	F	120	143	Right-handed alpha
Helix 118	118	F	155	171	Right-handed alpha
Helix 119	119	F	172	174	Right-handed 310
Helix 120	120	F	175	177	Right-handed 310
Helix 121	121	F	178	190	Right-handed alpha
Helix 122	122	F	190	197	Right-handed alpha
Helix 123	123	F	201	216	Right-handed alpha
Helix 124	124	F	217	232	Right-handed alpha
Helix 125	125	F	237	250	Right-handed alpha
Helix 126	126	F	255	267	Right-handed alpha
Helix 127	127	F	269	273	Right-handed 310
Helix 128	128	F	274	295	Right-handed alpha
Helix 129	129	F	296	301	Right-handed 310
Helix 130	130	F	306	313	Right-handed 310
Helix 131	131	F	317	331	Right-handed alpha
Helix 132	132	F	343	358	Right-handed alpha
Helix 133	133	G	2	6	Right-handed 310
Helix 134	134	G	9	20	Right-handed alpha
Helix 135	135	G	37	39	Right-handed 310
Helix 136	136	G	40	54	Right-handed alpha
Helix 137	137	G	61	75	Right-handed alpha
Helix 138	138	G	75	87	Right-handed alpha
Helix 139	139	G	120	143	Right-handed alpha
Helix 140	140	G	155	171	Right-handed alpha
Helix 141	141	G	172	174	Right-handed 310
Helix 142	142	G	175	177	Right-handed 310
Helix 143	143	G	178	190	Right-handed alpha
Helix 144	144	G	190	197	Right-handed alpha
Helix 145	145	G	201	216	Right-handed alpha
Helix 146	146	G	217	232	Right-handed alpha
Helix 147	147	G	237	250	Right-handed alpha
Helix 148	148	G	255	267	Right-handed alpha
Helix 149	149	G	269	273	Right-handed 310
Helix 150	150	G	274	295	Right-handed alpha
Helix 151	151	G	296	301	Right-handed 310
Helix 152	152	G	306	313	Right-handed 310
Helix 153	153	G	317	331	Right-handed alpha
Helix 154	154	G	343	358	Right-handed alpha
Helix 155	155	H	2	6	Right-handed 310
Helix 156	156	H	9	20	Right-handed alpha
Helix 157	157	H	37	39	Right-handed 310
Helix 158	158	H	40	54	Right-handed alpha
Helix 159	159	H	61	75	Right-handed alpha
Helix 160	160	H	75	87	Right-handed alpha
Helix 161	161	H	120	143	Right-handed alpha
Helix 162	162	H	155	171	Right-handed alpha
Helix 163	163	H	172	174	Right-handed 310
Helix 164	164	H	175	177	Right-handed 310
Helix 165	165	H	178	190	Right-handed alpha
Helix 166	166	H	190	197	Right-handed alpha
Helix 167	167	H	201	216	Right-handed alpha
Helix 168	168	H	217	232	Right-handed alpha
Helix 169	169	H	237	250	Right-handed alpha
Helix 170	170	H	255	267	Right-handed alpha
Helix 171	171	H	269	273	Right-handed 310
Helix 172	172	H	274	295	Right-handed alpha
Helix 173	173	H	296	301	Right-handed 310
Helix 174	174	H	306	313	Right-handed 310
Helix 175	175	H	317	331	Right-handed alpha
Helix 176	176	H	343	358	Right-handed alpha
Helix 177	177	I	2	6	Right-handed 310
Helix 178	178	I	9	20	Right-handed alpha
Helix 179	179	I	37	39	Right-handed 310
Helix 180	180	I	40	54	Right-handed alpha
Helix 181	181	I	61	75	Right-handed alpha
Helix 182	182	I	75	87	Right-handed alpha
Helix 183	183	I	120	143	Right-handed alpha
Helix 184	184	I	155	171	Right-handed alpha
Helix 185	185	I	172	174	Right-handed 310
Helix 186	186	I	175	177	Right-handed 310
Helix 187	187	I	178	190	Right-handed alpha
Helix 188	188	I	190	197	Right-handed alpha
Helix 189	189	I	201	216	Right-handed alpha
Helix 190	190	I	217	232	Right-handed alpha
Helix 191	191	I	237	250	Right-handed alpha
Helix 192	192	I	255	267	Right-handed alpha
Helix 193	193	I	269	273	Right-handed 310
Helix 194	194	I	274	295	Right-handed alpha
Helix 195	195	I	296	301	Right-handed 310
Helix 196	196	I	306	313	Right-handed 310
Helix 197	197	I	317	331	Right-handed alpha
Helix 198	198	I	343	358	Right-handed alpha
Helix 199	199	J	2	6	Right-handed 310
Helix 200	200	J	9	20	Right-handed alpha
Helix 201	201	J	37	39	Right-handed 310
Helix 202	202	J	40	54	Right-handed alpha
Helix 203	203	J	61	75	Right-handed alpha
Helix 204	204	J	75	87	Right-handed alpha
Helix 205	205	J	120	143	Right-handed alpha
Helix 206	206	J	155	171	Right-handed alpha
Helix 207	207	J	172	174	Right-handed 310
Helix 208	208	J	175	177	Right-handed 310
Helix 209	209	J	178	190	Right-handed alpha
Helix 210	210	J	190	197	Right-handed alpha
Helix 211	211	J	201	216	Right-handed alpha
Helix 212	212	J	217	232	Right-handed alpha
Helix 213	213	J	237	250	Right-handed alpha
Helix 214	214	J	255	267	Right-handed alpha
Helix 215	215	J	269	273	Right-handed 310
Helix 216	216	J	274	295	Right-handed alpha
Helix 217	217	J	296	301	Right-handed 310
Helix 218	218	J	306	313	Right-handed 310
Helix 219	219	J	317	331	Right-handed alpha
Helix 220	220	J	343	358	Right-handed alpha

There are 30 sheets in PDB entry 2YHM. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC, A, DB, C, EA, EB, EC, FA, FB, FC, GA, GB, GC, HA, HB, HC, IA, IB, IC, JA, JB, JC,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	28	first strand
Strand 2	A	88	89	parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	34	first strand
Strand 2	A	92	93	parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	104	first strand
Strand 2	A	107	114	anti-parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	28	first strand
Strand 2	B	88	89	parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	34	first strand
Strand 2	B	92	93	parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	104	first strand
Strand 2	B	107	114	anti-parallel

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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	28	first strand
Strand 2	C	88	89	parallel

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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	34	first strand
Strand 2	C	92	93	parallel

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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	104	first strand
Strand 2	C	107	114	anti-parallel

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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	28	first strand
Strand 2	D	88	89	parallel

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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	34	first strand
Strand 2	D	92	93	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	97	104	first strand
Strand 2	D	107	114	anti-parallel

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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	27	28	first strand
Strand 2	E	88	89	parallel

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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	33	34	first strand
Strand 2	E	92	93	parallel

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There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	97	103	first strand
Strand 2	E	108	114	anti-parallel

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There are 2 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	27	28	first strand
Strand 2	F	88	89	parallel

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There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	33	34	first strand
Strand 2	F	92	93	parallel

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There are 2 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	97	103	first strand
Strand 2	F	108	114	anti-parallel

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There are 2 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	27	28	first strand
Strand 2	G	88	89	parallel

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There are 2 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	33	34	first strand
Strand 2	G	92	93	parallel

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There are 2 strands in GC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	97	103	first strand
Strand 2	G	108	114	anti-parallel

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There are 2 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	27	28	first strand
Strand 2	H	88	89	parallel

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There are 2 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	33	34	first strand
Strand 2	H	92	93	parallel

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There are 2 strands in HC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	97	103	first strand
Strand 2	H	108	114	anti-parallel

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There are 2 strands in IA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	27	28	first strand
Strand 2	I	88	89	parallel

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There are 2 strands in IB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	33	34	first strand
Strand 2	I	92	93	parallel

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There are 2 strands in IC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	97	103	first strand
Strand 2	I	108	114	anti-parallel

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There are 2 strands in JA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	27	28	first strand
Strand 2	J	88	89	parallel

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There are 2 strands in JB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	33	34	first strand
Strand 2	J	92	93	parallel

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There are 2 strands in JC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	97	103	first strand
Strand 2	J	108	114	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2YHM

Analysis of interatomic Contacts of Structural Units in PDB entry:
2YHM