Analysis of interatomic Contacts of Structural Units in PDB entry:
2YII


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YII entry

There are 8 chains in PDB entry 2YII (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 9SER 174
A
ASP 178LEU 677
B
ARG 8SER 174
B
ASP 178LEU 677
C
SER 9SER 174
C
ASP 178GLY 678
D
SER 9SER 174
D
ASP 178LEU 677
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are132 helices in PDB entry 2YII. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
9 24Right-handed alpha
Helix 2
2
A
36 46Right-handed alpha
Helix 3
3
A
54 75Right-handed alpha
Helix 4
4
A
86 90Right-handed 310
Helix 5
5
A
96 109Right-handed alpha
Helix 6
6
A
125 141Right-handed alpha
Helix 7
7
A
148 161Right-handed alpha
Helix 8
8
A
178 190Right-handed alpha
Helix 9
9
A
207 214Right-handed alpha
Helix 10
10
A
224 231Right-handed alpha
Helix 11
11
A
233 266Right-handed alpha
Helix 12
12
A
268 272Right-handed 310
Helix 13
13
A
273 279Right-handed alpha
Helix 14
14
A
282 297Right-handed alpha
Helix 15
15
A
299 311Right-handed alpha
Helix 16
16
A
312 316Right-handed 310
Helix 17
17
A
321 326Right-handed alpha
Helix 18
18
A
326 350Right-handed alpha
Helix 19
19
A
360 363Right-handed 310
Helix 20
20
A
373 403Right-handed alpha
Helix 21
21
A
411 415Right-handed 310
Helix 22
22
A
419 423Right-handed 310
Helix 23
23
A
426 444Right-handed alpha
Helix 24
24
A
447 451Right-handed 310
Helix 25
25
A
464 518Right-handed alpha
Helix 26
26
A
521 535Right-handed alpha
Helix 27
27
A
536 540Right-handed 310
Helix 28
28
A
549 566Right-handed alpha
Helix 29
29
A
575 605Right-handed alpha
Helix 30
30
A
618 623Right-handed 310
Helix 31
31
A
625 634Right-handed alpha
Helix 32
32
A
648 662Right-handed alpha
Helix 33
33
A
665 673Right-handed alpha
Helix 34
34
B
9 24Right-handed alpha
Helix 35
35
B
36 46Right-handed alpha
Helix 36
36
B
58 75Right-handed alpha
Helix 37
37
B
86 90Right-handed 310
Helix 38
38
B
96 109Right-handed alpha
Helix 39
39
B
125 141Right-handed alpha
Helix 40
40
B
148 161Right-handed alpha
Helix 41
41
B
178 190Right-handed alpha
Helix 42
42
B
207 213Right-handed alpha
Helix 43
43
B
224 231Right-handed alpha
Helix 44
44
B
233 266Right-handed alpha
Helix 45
45
B
268 272Right-handed 310
Helix 46
46
B
273 279Right-handed alpha
Helix 47
47
B
282 297Right-handed alpha
Helix 48
48
B
299 310Right-handed alpha
Helix 49
49
B
312 316Right-handed 310
Helix 50
50
B
321 326Right-handed alpha
Helix 51
51
B
326 350Right-handed alpha
Helix 52
52
B
373 403Right-handed alpha
Helix 53
53
B
404 407Right-handed 310
Helix 54
54
B
411 415Right-handed 310
Helix 55
55
B
419 423Right-handed 310
Helix 56
56
B
426 444Right-handed alpha
Helix 57
57
B
447 451Right-handed 310
Helix 58
58
B
464 518Right-handed alpha
Helix 59
59
B
521 535Right-handed alpha
Helix 60
60
B
536 540Right-handed 310
Helix 61
61
B
549 567Right-handed alpha
Helix 62
62
B
573 606Right-handed alpha
Helix 63
63
B
618 623Right-handed 310
Helix 64
64
B
625 634Right-handed alpha
Helix 65
65
B
648 662Right-handed alpha
Helix 66
66
B
665 673Right-handed alpha
Helix 67
67
C
9 24Right-handed alpha
Helix 68
68
C
36 46Right-handed alpha
Helix 69
69
C
58 75Right-handed alpha
Helix 70
70
C
86 90Right-handed 310
Helix 71
71
C
96 109Right-handed alpha
Helix 72
72
C
125 141Right-handed alpha
Helix 73
73
C
148 161Right-handed alpha
Helix 74
74
C
178 190Right-handed alpha
Helix 75
75
C
207 214Right-handed alpha
Helix 76
76
C
224 231Right-handed alpha
Helix 77
77
C
233 266Right-handed alpha
Helix 78
78
C
268 272Right-handed 310
Helix 79
79
C
273 279Right-handed alpha
Helix 80
80
C
282 297Right-handed alpha
Helix 81
81
C
299 310Right-handed alpha
Helix 82
82
C
312 316Right-handed 310
Helix 83
83
C
321 326Right-handed alpha
Helix 84
84
C
326 350Right-handed alpha
Helix 85
85
C
360 363Right-handed 310
Helix 86
86
C
373 403Right-handed alpha
Helix 87
87
C
411 415Right-handed 310
Helix 88
88
C
419 423Right-handed 310
Helix 89
89
C
426 444Right-handed alpha
Helix 90
90
C
447 451Right-handed 310
Helix 91
91
C
464 518Right-handed alpha
Helix 92
92
C
521 535Right-handed alpha
Helix 93
93
C
536 540Right-handed 310
Helix 94
94
C
549 567Right-handed alpha
Helix 95
95
C
573 606Right-handed alpha
Helix 96
96
C
618 623Right-handed 310
Helix 97
97
C
625 634Right-handed alpha
Helix 98
98
C
648 662Right-handed alpha
Helix 99
99
C
665 673Right-handed alpha
Helix 100
100
D
9 24Right-handed alpha
Helix 101
101
D
36 46Right-handed alpha
Helix 102
102
D
54 75Right-handed alpha
Helix 103
103
D
86 90Right-handed 310
Helix 104
104
D
96 109Right-handed alpha
Helix 105
105
D
125 141Right-handed alpha
Helix 106
106
D
148 161Right-handed alpha
Helix 107
107
D
178 190Right-handed alpha
Helix 108
108
D
207 214Right-handed alpha
Helix 109
109
D
224 231Right-handed alpha
Helix 110
110
D
233 266Right-handed alpha
Helix 111
111
D
268 272Right-handed 310
Helix 112
112
D
273 279Right-handed alpha
Helix 113
113
D
282 297Right-handed alpha
Helix 114
114
D
299 311Right-handed alpha
Helix 115
115
D
312 316Right-handed 310
Helix 116
116
D
321 326Right-handed alpha
Helix 117
117
D
326 350Right-handed alpha
Helix 118
118
D
360 363Right-handed 310
Helix 119
119
D
373 403Right-handed alpha
Helix 120
120
D
411 415Right-handed 310
Helix 121
121
D
419 423Right-handed 310
Helix 122
122
D
426 444Right-handed alpha
Helix 123
123
D
447 451Right-handed 310
Helix 124
124
D
464 518Right-handed alpha
Helix 125
125
D
521 535Right-handed alpha
Helix 126
126
D
536 540Right-handed 310
Helix 127
127
D
549 567Right-handed alpha
Helix 128
128
D
573 605Right-handed alpha
Helix 129
129
D
618 623Right-handed 310
Helix 130
130
D
625 634Right-handed alpha
Helix 131
131
D
648 662Right-handed alpha
Helix 132
132
D
665 674Right-handed alpha
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There are 13 sheets in PDB entry 2YII. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC, CD, A, DB, C,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
26 29first strand
Strand 2
A
50 53parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
163 165first strand
Strand 2
A
196 199anti-parallel
Strand 3
A
204 206anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
357 359first strand
Strand 2
A
364 366anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
26 29first strand
Strand 2
B
50 53parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
163 165first strand
Strand 2
B
196 199anti-parallel
Strand 3
B
203 206anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
357 359first strand
Strand 2
B
364 366anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
26 29first strand
Strand 2
C
50 53parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
123 124first strand
Strand 2
C
167 168anti-parallel
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There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
163 165first strand
Strand 2
C
196 199anti-parallel
Strand 3
C
203 206anti-parallel
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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
357 359first strand
Strand 2
C
364 366anti-parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
26 29first strand
Strand 2
D
50 53parallel
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There are 3 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
163 165first strand
Strand 2
D
196 199anti-parallel
Strand 3
D
203 206anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
357 359first strand
Strand 2
D
364 366anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il