Analysis of interatomic Contacts of Structural Units in PDB entry:
2YIJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YIJ entry

There are 2 chains in PDB entry 2YIJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 19LEU 417
B
 ARG 22ASP 418
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 2YIJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 27Right-handed alpha
Helix 2
2
A
40 60Right-handed alpha
Helix 3
3
A
79 84Right-handed alpha
Helix 4
4
A
137 145Right-handed alpha
Helix 5
5
A
173 178Right-handed alpha
Helix 6
6
A
179 182Right-handed 310
Helix 7
7
A
188 196Right-handed alpha
Helix 8
8
A
207 223Right-handed alpha
Helix 9
9
A
236 252Right-handed alpha
Helix 10
10
A
279 288Right-handed alpha
Helix 11
11
A
303 307Right-handed 310
Helix 12
12
A
322 326Right-handed 310
Helix 13
13
A
334 340Right-handed alpha
Helix 14
14
A
340 351Right-handed alpha
Helix 15
15
A
367 374Right-handed 310
Helix 16
16
A
379 383Right-handed 310
Helix 17
17
A
391 394Right-handed 310
Helix 18
18
B
22 27Right-handed alpha
Helix 19
19
B
40 61Right-handed alpha
Helix 20
20
B
79 84Right-handed alpha
Helix 21
21
B
137 145Right-handed alpha
Helix 22
22
B
173 178Right-handed alpha
Helix 23
23
B
179 182Right-handed 310
Helix 24
24
B
188 196Right-handed alpha
Helix 25
25
B
207 223Right-handed alpha
Helix 26
26
B
236 252Right-handed alpha
Helix 27
27
B
279 288Right-handed alpha
Helix 28
28
B
303 307Right-handed 310
Helix 29
29
B
322 326Right-handed 310
Helix 30
30
B
334 340Right-handed alpha
Helix 31
31
B
340 351Right-handed alpha
Helix 32
32
B
367 374Right-handed 310
Helix 33
33
B
379 383Right-handed 310
Helix 34
34
B
391 394Right-handed 310
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There are 6 sheets in PDB entry 2YIJ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 103first strand
Strand 2
A
128 136anti-parallel
Strand 3
A
147 153anti-parallel
Strand 4
A
228 235parallel
Strand 5
A
267 272parallel
Strand 6
A
292 299parallel
Strand 7
A
317 321parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 172first strand
Strand 2
A
185 187anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 398first strand
Strand 2
A
404 406anti-parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 103first strand
Strand 2
B
128 136anti-parallel
Strand 3
B
147 153anti-parallel
Strand 4
B
228 235parallel
Strand 5
B
267 272parallel
Strand 6
B
292 299parallel
Strand 7
B
317 321parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 172first strand
Strand 2
B
185 187anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
396 398first strand
Strand 2
B
404 406anti-parallel
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