Analysis of interatomic Contacts of Structural Units in PDB entry:
2YIP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YIP entry

There are 6 chains in PDB entry 2YIP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 4SER 134
B
 GLN 4SER 134
C
 GLN 4SER 134
D
 LEU 5SER 134
E
 GLN 4SER 134
F
 GLN 4SER 134
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2YIP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 41Right-handed alpha
Helix 2
2
A
103 113Right-handed alpha
Helix 3
3
B
30 40Right-handed alpha
Helix 4
4
B
103 113Right-handed alpha
Helix 5
5
C
30 40Right-handed alpha
Helix 6
6
C
103 113Right-handed alpha
Helix 7
7
D
30 40Right-handed alpha
Helix 8
8
D
103 113Right-handed alpha
Helix 9
9
E
30 40Right-handed alpha
Helix 10
10
E
103 113Right-handed alpha
Helix 11
11
F
30 41Right-handed alpha
Helix 12
12
F
103 113Right-handed alpha
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There are 18 sheets in PDB entry 2YIP. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, CA, CB, CC, CD, A, DB, EA, EB, EC, ED, FA, FB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
A
65 67anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 27first strand
Strand 2
A
55 59anti-parallel
Strand 3
A
46 50anti-parallel
Strand 4
A
71 75anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
B
119 123anti-parallel
Strand 3
B
126 130anti-parallel
Strand 4
B
95 98anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 98first strand
Strand 2
A
126 130anti-parallel
Strand 3
A
119 123anti-parallel
Strand 4
B
86 87anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 18first strand
Strand 2
B
65 67anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 27first strand
Strand 2
B
55 59anti-parallel
Strand 3
B
46 50anti-parallel
Strand 4
B
71 75anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
16 18first strand
Strand 2
C
65 67anti-parallel
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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
22 27first strand
Strand 2
C
55 59anti-parallel
Strand 3
C
46 50anti-parallel
Strand 4
C
71 75anti-parallel
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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
86 87first strand
Strand 2
D
119 123anti-parallel
Strand 3
D
126 130anti-parallel
Strand 4
D
95 98anti-parallel
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There are 4 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
95 98first strand
Strand 2
C
126 130anti-parallel
Strand 3
C
119 123anti-parallel
Strand 4
D
86 87anti-parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
16 18first strand
Strand 2
D
65 67anti-parallel
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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
22 27first strand
Strand 2
D
55 59anti-parallel
Strand 3
D
46 50anti-parallel
Strand 4
D
71 75anti-parallel
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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
16 18first strand
Strand 2
E
65 67anti-parallel
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There are 4 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
22 27first strand
Strand 2
E
55 59anti-parallel
Strand 3
E
46 50anti-parallel
Strand 4
E
71 75anti-parallel
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There are 4 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
85 87first strand
Strand 2
F
119 121anti-parallel
Strand 3
F
126 130anti-parallel
Strand 4
F
95 98anti-parallel
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There are 4 strands in ED sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
95 98first strand
Strand 2
E
126 130anti-parallel
Strand 3
E
119 121anti-parallel
Strand 4
F
85 87anti-parallel
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There are 2 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
16 18first strand
Strand 2
F
65 67anti-parallel
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There are 4 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
22 27first strand
Strand 2
F
55 59anti-parallel
Strand 3
F
46 50anti-parallel
Strand 4
F
71 75anti-parallel
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