Analysis of interatomic Contacts of Structural Units in PDB entry:
2YIV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YIV entry

There is 1 chain in PDB entry 2YIV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 ALA 2ASN 626
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 33 helices in PDB entry 2YIV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
X
3 7Right-handed 310
Helix 2
2
X
10 24Right-handed alpha
Helix 3
3
X
27 36Right-handed alpha
Helix 4
4
X
39 45Right-handed alpha
Helix 5
5
X
73 109Right-handed alpha
Helix 6
6
X
119 131Right-handed alpha
Helix 7
7
X
138 153Right-handed alpha
Helix 8
8
X
161 166Right-handed alpha
Helix 9
9
X
169 179Right-handed alpha
Helix 10
10
X
185 197Right-handed alpha
Helix 11
11
X
204 235Right-handed alpha
Helix 12
12
X
245 249Right-handed 310
Helix 13
13
X
262 276Right-handed alpha
Helix 14
14
X
276 283Right-handed alpha
Helix 15
15
X
294 305Right-handed alpha
Helix 16
16
X
311 314Right-handed 310
Helix 17
17
X
315 321Right-handed alpha
Helix 18
18
X
337 346Right-handed alpha
Helix 19
19
X
367 369Right-handed 310
Helix 20
20
X
370 389Right-handed alpha
Helix 21
21
X
408 418Right-handed alpha
Helix 22
22
X
424 434Right-handed alpha
Helix 23
23
X
454 467Right-handed alpha
Helix 24
24
X
475 484Right-handed alpha
Helix 25
25
X
488 490Right-handed 310
Helix 26
26
X
491 496Right-handed alpha
Helix 27
27
X
497 511Right-handed alpha
Helix 28
28
X
528 544Right-handed alpha
Helix 29
29
X
546 550Right-handed 310
Helix 30
30
X
561 574Right-handed alpha
Helix 31
31
X
589 598Right-handed alpha
Helix 32
32
X
600 605Right-handed alpha
Helix 33
33
X
613 632Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 2YIV. Click on sheet of interest to get list of strands forming it: XA, XB, XC, XD,

There are 2 strands in XA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
47 48first strand
Strand 2
X
56 57anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in XB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
240 244first strand
Strand 2
X
401 405anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in XC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
308 310first strand
Strand 2
X
288 293parallel
Strand 3
X
254 259parallel
Strand 4
X
324 329parallel
Strand 5
X
348 351parallel
Strand 6
X
362 363parallel
Back to list of sheets
Back to top of page

There are 6 strands in XD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
520 524first strand
Strand 2
X
470 474parallel
Strand 3
X
440 443parallel
Strand 4
X
552 556parallel
Strand 5
X
577 580parallel
Strand 6
X
607 610parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il