Analysis of interatomic Contacts of Structural Units in PDB entry:
2YJ5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YJ5 entry

There are 2 chains in PDB entry 2YJ5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 385ARG 635
B
 ALA 384ARG 635
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 2YJ5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
386 394Right-handed alpha
Helix 2
2
A
402 408Right-handed alpha
Helix 3
3
A
417 421Right-handed alpha
Helix 4
4
A
434 446Right-handed alpha
Helix 5
5
A
450 463Right-handed alpha
Helix 6
6
A
523 525Right-handed 310
Helix 7
7
A
526 532Right-handed alpha
Helix 8
8
A
533 535Right-handed 310
Helix 9
9
A
544 555Right-handed alpha
Helix 10
10
A
565 578Right-handed alpha
Helix 11
11
A
592 597Right-handed alpha
Helix 12
12
A
624 633Right-handed alpha
Helix 13
13
B
386 394Right-handed alpha
Helix 14
14
B
401 410Right-handed alpha
Helix 15
15
B
434 446Right-handed alpha
Helix 16
16
B
450 463Right-handed alpha
Helix 17
17
B
523 532Right-handed alpha
Helix 18
18
B
533 535Right-handed 310
Helix 19
19
B
544 556Right-handed alpha
Helix 20
20
B
565 578Right-handed alpha
Helix 21
21
B
592 599Right-handed alpha
Helix 22
22
B
607 612Right-handed alpha
Helix 23
23
B
624 635Right-handed alpha
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There are 4 sheets in PDB entry 2YJ5. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 398first strand
Strand 2
A
618 620anti-parallel
Strand 3
A
601 605parallel
Strand 4
A
583 587parallel
Strand 5
A
412 416parallel
Strand 6
A
536 540parallel
Strand 7
A
560 561parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 432first strand
Strand 2
A
508 516anti-parallel
Strand 3
A
501 505anti-parallel
Strand 4
A
488 494anti-parallel
Strand 5
A
480 485anti-parallel
Strand 6
A
471 476anti-parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
396 398first strand
Strand 2
B
618 620anti-parallel
Strand 3
B
601 605parallel
Strand 4
B
583 587parallel
Strand 5
B
412 416parallel
Strand 6
B
536 540parallel
Strand 7
B
560 561parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
427 432first strand
Strand 2
B
508 516anti-parallel
Strand 3
B
501 505anti-parallel
Strand 4
B
488 494anti-parallel
Strand 5
B
480 485anti-parallel
Strand 6
B
471 476anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il