Analysis of interatomic Contacts of Structural Units in PDB entry:
2YJE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YJE entry

There are 4 chains in PDB entry 2YJE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 6ARG 372
B
 THR 6HIS 371
C
 THR 6HIS 371
M
 GLU 69ARG 120
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 67 helices in PDB entry 2YJE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
78 92Right-handed alpha
Helix 2
2
A
97 101Right-handed 310
Helix 3
3
A
112 127Right-handed alpha
Helix 4
4
A
137 145Right-handed alpha
Helix 5
5
A
172 175Right-handed 310
Helix 6
6
A
181 196Right-handed alpha
Helix 7
7
A
202 217Right-handed alpha
Helix 8
8
A
222 233Right-handed alpha
Helix 9
9
A
252 260Right-handed alpha
Helix 10
10
A
263 268Right-handed 310
Helix 11
11
A
273 284Right-handed alpha
Helix 12
12
A
286 288Right-handed 310
Helix 13
13
A
289 295Right-handed alpha
Helix 14
14
A
301 305Right-handed 310
Helix 15
15
A
308 321Right-handed alpha
Helix 16
16
A
332 336Right-handed 310
Helix 17
17
A
337 349Right-handed alpha
Helix 18
18
A
350 353Right-handed 310
Helix 19
19
A
359 366Right-handed alpha
Helix 20
20
A
367 371Right-handed 310
Helix 21
21
B
54 61Right-handed alpha
Helix 22
22
B
62 65Right-handed 310
Helix 23
23
B
78 92Right-handed alpha
Helix 24
24
B
97 101Right-handed 310
Helix 25
25
B
112 127Right-handed alpha
Helix 26
26
B
137 145Right-handed alpha
Helix 27
27
B
172 175Right-handed 310
Helix 28
28
B
181 196Right-handed alpha
Helix 29
29
B
202 217Right-handed alpha
Helix 30
30
B
222 233Right-handed alpha
Helix 31
31
B
252 260Right-handed alpha
Helix 32
32
B
263 268Right-handed 310
Helix 33
33
B
273 284Right-handed alpha
Helix 34
34
B
286 288Right-handed 310
Helix 35
35
B
289 295Right-handed alpha
Helix 36
36
B
301 305Right-handed 310
Helix 37
37
B
308 321Right-handed alpha
Helix 38
38
B
332 336Right-handed 310
Helix 39
39
B
337 349Right-handed alpha
Helix 40
40
B
350 353Right-handed 310
Helix 41
41
B
359 366Right-handed alpha
Helix 42
42
B
367 371Right-handed 310
Helix 43
43
C
55 59Right-handed 310
Helix 44
44
C
78 92Right-handed alpha
Helix 45
45
C
97 101Right-handed 310
Helix 46
46
C
112 127Right-handed alpha
Helix 47
47
C
137 145Right-handed alpha
Helix 48
48
C
172 175Right-handed 310
Helix 49
49
C
181 196Right-handed alpha
Helix 50
50
C
202 217Right-handed alpha
Helix 51
51
C
222 233Right-handed alpha
Helix 52
52
C
252 257Right-handed alpha
Helix 53
53
C
258 262Right-handed 310
Helix 54
54
C
263 268Right-handed 310
Helix 55
55
C
273 285Right-handed alpha
Helix 56
56
C
286 288Right-handed 310
Helix 57
57
C
289 295Right-handed alpha
Helix 58
58
C
301 305Right-handed 310
Helix 59
59
C
308 321Right-handed alpha
Helix 60
60
C
332 336Right-handed 310
Helix 61
61
C
337 349Right-handed alpha
Helix 62
62
C
350 353Right-handed 310
Helix 63
63
C
359 366Right-handed alpha
Helix 64
64
C
367 371Right-handed 310
Helix 65
65
M
69 80Right-handed alpha
Helix 66
66
M
83 90Right-handed alpha
Helix 67
67
M
102 120Right-handed alpha
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There are 21 sheets in PDB entry 2YJE. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, BA, BB, BC, BD, BE, BF, BG, CA, CB, CC, CD, CE, CF, CG,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
16 21anti-parallel
Strand 3
A
8 12anti-parallel
Strand 4
A
103 107parallel
Strand 5
A
131 136parallel
Strand 6
A
357 358anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
75 76anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 170first strand
Strand 2
A
160 166parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 178first strand
Strand 2
A
160 166anti-parallel
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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 330first strand
Strand 2
A
297 300parallel
Strand 3
A
150 155parallel
Strand 4
A
160 166anti-parallel
Strand 5
A
169 170parallel
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There are 5 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 330first strand
Strand 2
A
297 300parallel
Strand 3
A
150 155parallel
Strand 4
A
160 166anti-parallel
Strand 5
A
176 178anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 241first strand
Strand 2
A
247 250anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 32first strand
Strand 2
B
16 21anti-parallel
Strand 3
B
8 12anti-parallel
Strand 4
B
103 107parallel
Strand 5
B
131 136parallel
Strand 6
B
357 358anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 72first strand
Strand 2
B
75 76anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 170first strand
Strand 2
B
160 166parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 178first strand
Strand 2
B
160 166anti-parallel
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There are 5 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
329 330first strand
Strand 2
B
297 300parallel
Strand 3
B
150 155parallel
Strand 4
B
160 166anti-parallel
Strand 5
B
169 170parallel
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There are 5 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
329 330first strand
Strand 2
B
297 300parallel
Strand 3
B
150 155parallel
Strand 4
B
160 166anti-parallel
Strand 5
B
176 178anti-parallel
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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 241first strand
Strand 2
B
247 250anti-parallel
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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
29 32first strand
Strand 2
C
16 21anti-parallel
Strand 3
C
8 12anti-parallel
Strand 4
C
103 107parallel
Strand 5
C
131 136parallel
Strand 6
C
357 358anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
71 72first strand
Strand 2
C
75 76anti-parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
169 170first strand
Strand 2
C
160 166parallel
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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
176 178first strand
Strand 2
C
160 166anti-parallel
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There are 5 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
329 330first strand
Strand 2
C
297 300parallel
Strand 3
C
150 155parallel
Strand 4
C
160 166anti-parallel
Strand 5
C
169 170parallel
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There are 5 strands in CF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
329 330first strand
Strand 2
C
297 300parallel
Strand 3
C
150 155parallel
Strand 4
C
160 166anti-parallel
Strand 5
C
176 178anti-parallel
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There are 2 strands in CG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
238 241first strand
Strand 2
C
247 250anti-parallel
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