Analysis of interatomic Contacts of Structural Units in PDB entry:
2YJF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YJF entry

There are 4 chains in PDB entry 2YJF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5PHE 375
B
 THR 5PHE 375
C
 THR 6PHE 375
D
 THR 5THR 351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are104 helices in PDB entry 2YJF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
54 61Right-handed alpha
Helix 2
2
A
71 75Right-handed 310
Helix 3
3
A
78 92Right-handed alpha
Helix 4
4
A
112 126Right-handed alpha
Helix 5
5
A
137 145Right-handed alpha
Helix 6
6
A
172 175Right-handed 310
Helix 7
7
A
181 194Right-handed alpha
Helix 8
8
A
202 217Right-handed alpha
Helix 9
9
A
222 233Right-handed alpha
Helix 10
10
A
252 260Right-handed alpha
Helix 11
11
A
263 268Right-handed 310
Helix 12
12
A
273 284Right-handed alpha
Helix 13
13
A
286 288Right-handed 310
Helix 14
14
A
289 295Right-handed alpha
Helix 15
15
A
301 305Right-handed 310
Helix 16
16
A
308 321Right-handed alpha
Helix 17
17
A
334 336Right-handed 310
Helix 18
18
A
337 349Right-handed alpha
Helix 19
19
A
350 356Right-handed 310
Helix 20
20
A
359 366Right-handed alpha
Helix 21
21
A
368 374Right-handed alpha
Helix 22
22
B
71 75Right-handed 310
Helix 23
23
B
78 92Right-handed alpha
Helix 24
24
B
112 126Right-handed alpha
Helix 25
25
B
137 145Right-handed alpha
Helix 26
26
B
172 175Right-handed 310
Helix 27
27
B
181 194Right-handed alpha
Helix 28
28
B
202 217Right-handed alpha
Helix 29
29
B
222 233Right-handed alpha
Helix 30
30
B
252 260Right-handed alpha
Helix 31
31
B
263 268Right-handed 310
Helix 32
32
B
273 284Right-handed alpha
Helix 33
33
B
289 295Right-handed alpha
Helix 34
34
B
301 305Right-handed 310
Helix 35
35
B
308 321Right-handed alpha
Helix 36
36
B
332 336Right-handed 310
Helix 37
37
B
337 349Right-handed alpha
Helix 38
38
B
350 356Right-handed 310
Helix 39
39
B
359 366Right-handed alpha
Helix 40
40
B
368 374Right-handed alpha
Helix 41
41
C
54 60Right-handed alpha
Helix 42
42
C
71 75Right-handed 310
Helix 43
43
C
78 92Right-handed alpha
Helix 44
44
C
112 126Right-handed alpha
Helix 45
45
C
137 145Right-handed alpha
Helix 46
46
C
172 175Right-handed 310
Helix 47
47
C
181 194Right-handed alpha
Helix 48
48
C
195 197Right-handed 310
Helix 49
49
C
202 217Right-handed alpha
Helix 50
50
C
222 233Right-handed alpha
Helix 51
51
C
252 260Right-handed alpha
Helix 52
52
C
263 268Right-handed 310
Helix 53
53
C
273 284Right-handed alpha
Helix 54
54
C
289 296Right-handed alpha
Helix 55
55
C
301 305Right-handed 310
Helix 56
56
C
308 321Right-handed alpha
Helix 57
57
C
334 336Right-handed 310
Helix 58
58
C
337 349Right-handed alpha
Helix 59
59
C
359 366Right-handed alpha
Helix 60
60
C
368 374Right-handed alpha
Helix 61
61
D
71 75Right-handed 310
Helix 62
62
D
78 92Right-handed alpha
Helix 63
63
D
112 126Right-handed alpha
Helix 64
64
D
137 145Right-handed alpha
Helix 65
65
D
172 175Right-handed 310
Helix 66
66
D
181 194Right-handed alpha
Helix 67
67
D
202 217Right-handed alpha
Helix 68
68
D
222 230Right-handed alpha
Helix 69
69
D
252 260Right-handed alpha
Helix 70
70
D
263 268Right-handed 310
Helix 71
71
D
273 284Right-handed alpha
Helix 72
72
D
286 296Right-handed alpha
Helix 73
73
D
301 305Right-handed 310
Helix 74
74
D
308 321Right-handed alpha
Helix 75
75
D
334 336Right-handed 310
Helix 76
76
D
337 349Right-handed alpha
Helix 77
77
D
350 356Right-handed 310
Helix 78
78
D
359 366Right-handed alpha
Helix 79
79
D
367 372Right-handed 310
Helix 80
80
E
71 75Right-handed 310
Helix 81
81
E
78 92Right-handed alpha
Helix 82
82
E
112 126Right-handed alpha
Helix 83
83
E
137 145Right-handed alpha
Helix 84
84
E
172 175Right-handed 310
Helix 85
85
E
181 194Right-handed alpha
Helix 86
86
E
202 217Right-handed alpha
Helix 87
87
E
222 233Right-handed alpha
Helix 88
88
E
252 260Right-handed alpha
Helix 89
89
E
263 268Right-handed 310
Helix 90
90
E
273 284Right-handed alpha
Helix 91
91
E
289 296Right-handed alpha
Helix 92
92
E
301 305Right-handed 310
Helix 93
93
E
308 321Right-handed alpha
Helix 94
94
E
334 336Right-handed 310
Helix 95
95
E
337 349Right-handed alpha
Helix 96
96
E
350 356Right-handed 310
Helix 97
97
E
359 366Right-handed alpha
Helix 98
98
E
367 371Right-handed 310
Helix 99
99
M
68 78Right-handed alpha
Helix 100
100
M
83 89Right-handed alpha
Helix 101
101
M
103 124Right-handed alpha
Helix 102
102
M
127 135Right-handed alpha
Helix 103
103
M
143 168Right-handed alpha
Helix 104
104
M
171 178Right-handed alpha
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There are 29 sheets in PDB entry 2YJF. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, BE, BF, CA, CB, CC, CD, CE, CF, A, DB, C, DD, DE, DF, EA, EB, EC, ED, EE,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
16 21anti-parallel
Strand 3
A
8 11anti-parallel
Strand 4
A
103 107parallel
Strand 5
A
131 136parallel
Strand 6
A
357 358anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 170first strand
Strand 2
A
160 166parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 178first strand
Strand 2
A
160 166anti-parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 330first strand
Strand 2
A
297 300parallel
Strand 3
A
150 155parallel
Strand 4
A
160 166anti-parallel
Strand 5
A
169 170parallel
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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 330first strand
Strand 2
A
297 300parallel
Strand 3
A
150 155parallel
Strand 4
A
160 166anti-parallel
Strand 5
A
176 178anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 241first strand
Strand 2
A
247 250anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 31first strand
Strand 2
B
17 21anti-parallel
Strand 3
B
8 11anti-parallel
Strand 4
B
103 107parallel
Strand 5
B
131 136parallel
Strand 6
B
357 358anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 170first strand
Strand 2
B
160 166parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 178first strand
Strand 2
B
160 166anti-parallel
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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
329 330first strand
Strand 2
B
297 300parallel
Strand 3
B
150 155parallel
Strand 4
B
160 166anti-parallel
Strand 5
B
169 170parallel
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There are 5 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
329 330first strand
Strand 2
B
297 300parallel
Strand 3
B
150 155parallel
Strand 4
B
160 166anti-parallel
Strand 5
B
176 178anti-parallel
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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 241first strand
Strand 2
B
247 250anti-parallel
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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
29 31first strand
Strand 2
C
17 21anti-parallel
Strand 3
C
8 12anti-parallel
Strand 4
C
103 107parallel
Strand 5
C
131 136parallel
Strand 6
C
357 358anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
169 170first strand
Strand 2
C
160 166parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
176 178first strand
Strand 2
C
160 166anti-parallel
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There are 5 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
329 330first strand
Strand 2
C
297 300parallel
Strand 3
C
150 155parallel
Strand 4
C
160 166anti-parallel
Strand 5
C
169 170parallel
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There are 5 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
329 330first strand
Strand 2
C
297 300parallel
Strand 3
C
150 155parallel
Strand 4
C
160 166anti-parallel
Strand 5
C
176 178anti-parallel
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There are 2 strands in CF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
238 241first strand
Strand 2
C
247 250anti-parallel
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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
29 32first strand
Strand 2
D
16 21anti-parallel
Strand 3
D
8 11anti-parallel
Strand 4
D
103 107parallel
Strand 5
D
131 136parallel
Strand 6
D
357 358anti-parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
169 170first strand
Strand 2
D
160 166parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
176 178first strand
Strand 2
D
160 166anti-parallel
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There are 5 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
329 330first strand
Strand 2
D
297 300parallel
Strand 3
D
150 155parallel
Strand 4
D
160 166anti-parallel
Strand 5
D
169 170parallel
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There are 5 strands in DE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
329 330first strand
Strand 2
D
297 300parallel
Strand 3
D
150 155parallel
Strand 4
D
160 166anti-parallel
Strand 5
D
176 178anti-parallel
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There are 2 strands in DF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
238 241first strand
Strand 2
D
247 250anti-parallel
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There are 6 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
29 31first strand
Strand 2
E
17 21anti-parallel
Strand 3
E
8 12anti-parallel
Strand 4
E
103 107parallel
Strand 5
E
131 136parallel
Strand 6
E
357 358anti-parallel
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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
169 170first strand
Strand 2
E
160 166parallel
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There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
176 178first strand
Strand 2
E
160 166anti-parallel
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There are 5 strands in ED sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
329 330first strand
Strand 2
E
297 300parallel
Strand 3
E
150 155parallel
Strand 4
E
160 166anti-parallel
Strand 5
E
169 170parallel
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There are 5 strands in EE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
329 330first strand
Strand 2
E
297 300parallel
Strand 3
E
150 155parallel
Strand 4
E
160 166anti-parallel
Strand 5
E
176 178anti-parallel
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