Analysis of interatomic Contacts of Structural Units in PDB entry:
2YJN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YJN entry

There are 2 chains in PDB entry 2YJN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 19GLY 436
B
 HIS 20GLU 380
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 2YJN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 35Right-handed alpha
Helix 2
2
A
37 47Right-handed alpha
Helix 3
3
A
56 58Right-handed 310
Helix 4
4
A
59 65Right-handed alpha
Helix 5
5
A
78 86Right-handed alpha
Helix 6
6
A
87 95Right-handed alpha
Helix 7
7
A
103 107Right-handed 310
Helix 8
8
A
108 123Right-handed alpha
Helix 9
9
A
129 144Right-handed alpha
Helix 10
10
A
155 165Right-handed alpha
Helix 11
11
A
176 189Right-handed alpha
Helix 12
12
A
190 192Right-handed 310
Helix 13
13
A
199 212Right-handed alpha
Helix 14
14
A
218 222Right-handed 310
Helix 15
15
A
232 236Right-handed 310
Helix 16
16
A
258 262Right-handed 310
Helix 17
17
A
291 297Right-handed alpha
Helix 18
18
A
328 333Right-handed alpha
Helix 19
19
A
334 336Right-handed 310
Helix 20
20
A
344 354Right-handed alpha
Helix 21
21
A
364 378Right-handed alpha
Helix 22
22
A
389 403Right-handed alpha
Helix 23
23
A
403 419Right-handed alpha
Helix 24
24
A
422 436Right-handed alpha
Helix 25
25
B
22 47Right-handed alpha
Helix 26
26
B
48 56Right-handed alpha
Helix 27
27
B
61 72Right-handed alpha
Helix 28
28
B
85 95Right-handed alpha
Helix 29
29
B
106 113Right-handed alpha
Helix 30
30
B
115 120Right-handed alpha
Helix 31
31
B
120 129Right-handed alpha
Helix 32
32
B
140 145Right-handed alpha
Helix 33
33
B
158 163Right-handed alpha
Helix 34
34
B
164 173Right-handed alpha
Helix 35
35
B
181 189Right-handed alpha
Helix 36
36
B
190 195Right-handed alpha
Helix 37
37
B
200 211Right-handed alpha
Helix 38
38
B
215 241Right-handed alpha
Helix 39
39
B
241 251Right-handed alpha
Helix 40
40
B
255 266Right-handed alpha
Helix 41
41
B
297 301Right-handed alpha
Helix 42
42
B
333 349Right-handed alpha
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There are 5 sheets in PDB entry 2YJN. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, BC,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 72first strand
Strand 2
A
50 55parallel
Strand 3
A
22 26parallel
Strand 4
A
147 150parallel
Strand 5
A
168 171parallel
Strand 6
A
227 229parallel
Strand 7
A
243 245parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 323first strand
Strand 2
A
301 304parallel
Strand 3
A
269 273parallel
Strand 4
A
338 341parallel
Strand 5
A
358 360parallel
Strand 6
A
380 382parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 75first strand
Strand 2
B
81 83anti-parallel
Strand 3
B
292 296parallel
Strand 4
B
271 276anti-parallel
Strand 5
B
98 99anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
280 281first strand
Strand 2
B
286 287anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
363 364first strand
Strand 2
B
374 376anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il