Analysis of interatomic Contacts of Structural Units in PDB entry:
2YJP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YJP entry

There are 3 chains in PDB entry 2YJP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 38GLU 284
B
 ALA 39GLU 284
C
 ALA 39GLU 284
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 2YJP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
40 48Right-handed alpha
Helix 2
2
A
72 87Right-handed alpha
Helix 3
3
A
88 90Right-handed 310
Helix 4
4
A
98 100Right-handed 310
Helix 5
5
A
101 108Right-handed alpha
Helix 6
6
A
121 126Right-handed alpha
Helix 7
7
A
151 156Right-handed 310
Helix 8
8
A
166 176Right-handed alpha
Helix 9
9
A
186 196Right-handed alpha
Helix 10
10
A
206 216Right-handed alpha
Helix 11
11
A
240 258Right-handed alpha
Helix 12
12
A
258 268Right-handed alpha
Helix 13
13
A
268 273Right-handed alpha
Helix 14
14
A
274 276Right-handed 310
Helix 15
15
A
277 282Right-handed alpha
Helix 16
16
B
40 48Right-handed alpha
Helix 17
17
B
72 87Right-handed alpha
Helix 18
18
B
88 90Right-handed 310
Helix 19
19
B
98 100Right-handed 310
Helix 20
20
B
101 108Right-handed alpha
Helix 21
21
B
123 126Right-handed 310
Helix 22
22
B
151 155Right-handed 310
Helix 23
23
B
166 176Right-handed alpha
Helix 24
24
B
186 196Right-handed alpha
Helix 25
25
B
206 216Right-handed alpha
Helix 26
26
B
240 258Right-handed alpha
Helix 27
27
B
258 268Right-handed alpha
Helix 28
28
B
268 273Right-handed alpha
Helix 29
29
B
274 276Right-handed 310
Helix 30
30
B
277 282Right-handed alpha
Helix 31
31
C
40 48Right-handed alpha
Helix 32
32
C
72 87Right-handed alpha
Helix 33
33
C
98 100Right-handed 310
Helix 34
34
C
101 108Right-handed alpha
Helix 35
35
C
121 126Right-handed alpha
Helix 36
36
C
151 156Right-handed 310
Helix 37
37
C
166 176Right-handed alpha
Helix 38
38
C
186 196Right-handed alpha
Helix 39
39
C
206 215Right-handed alpha
Helix 40
40
C
240 258Right-handed alpha
Helix 41
41
C
258 268Right-handed alpha
Helix 42
42
C
268 273Right-handed alpha
Helix 43
43
C
274 276Right-handed 310
Helix 44
44
C
277 282Right-handed alpha
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There are 14 sheets in PDB entry 2YJP. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE, CA, CB, CC, CD,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 96first strand
Strand 2
A
50 54parallel
Strand 3
A
113 114parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 58first strand
Strand 2
A
62 64anti-parallel
Strand 3
A
70 71anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 130first strand
Strand 2
A
235 237anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 137first strand
Strand 2
A
230 232anti-parallel
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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 184first strand
Strand 2
A
159 163parallel
Strand 3
A
201 205parallel
Strand 4
A
139 144anti-parallel
Strand 5
A
219 223anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 96first strand
Strand 2
B
50 54parallel
Strand 3
B
113 114parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 58first strand
Strand 2
B
62 64anti-parallel
Strand 3
B
70 71anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 130first strand
Strand 2
B
235 237anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 137first strand
Strand 2
B
230 232anti-parallel
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There are 5 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 184first strand
Strand 2
B
159 163parallel
Strand 3
B
201 205parallel
Strand 4
B
139 144anti-parallel
Strand 5
B
219 223anti-parallel
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There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
92 96first strand
Strand 2
C
50 54parallel
Strand 3
C
113 114parallel
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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 58first strand
Strand 2
C
62 64anti-parallel
Strand 3
C
70 71anti-parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
128 130first strand
Strand 2
C
235 237anti-parallel
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There are 5 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
180 184first strand
Strand 2
C
159 163parallel
Strand 3
C
201 205parallel
Strand 4
C
135 144anti-parallel
Strand 5
C
219 232anti-parallel
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