Analysis of interatomic Contacts of Structural Units in PDB entry:
2YJQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YJQ entry

There are 2 chains in PDB entry 2YJQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 7THR 517
B
 LYS 8THR 517
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 2YJQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 27Right-handed 310
Helix 2
2
A
47 51Right-handed 310
Helix 3
3
A
63 66Right-handed 310
Helix 4
4
A
72 78Right-handed alpha
Helix 5
5
A
81 86Right-handed alpha
Helix 6
6
A
89 103Right-handed alpha
Helix 7
7
A
159 171Right-handed alpha
Helix 8
8
A
187 189Right-handed 310
Helix 9
9
A
190 195Right-handed alpha
Helix 10
10
A
204 223Right-handed alpha
Helix 11
11
A
235 242Right-handed alpha
Helix 12
12
A
247 252Right-handed alpha
Helix 13
13
A
257 274Right-handed alpha
Helix 14
14
A
302 312Right-handed alpha
Helix 15
15
A
313 317Right-handed 310
Helix 16
16
A
325 332Right-handed alpha
Helix 17
17
A
333 335Right-handed 310
Helix 18
18
A
336 349Right-handed alpha
Helix 19
19
A
366 382Right-handed alpha
Helix 20
20
A
398 410Right-handed alpha
Helix 21
21
B
24 27Right-handed 310
Helix 22
22
B
47 51Right-handed 310
Helix 23
23
B
63 66Right-handed 310
Helix 24
24
B
72 79Right-handed alpha
Helix 25
25
B
81 86Right-handed alpha
Helix 26
26
B
89 103Right-handed alpha
Helix 27
27
B
125 129Right-handed 310
Helix 28
28
B
159 171Right-handed alpha
Helix 29
29
B
187 189Right-handed 310
Helix 30
30
B
190 195Right-handed alpha
Helix 31
31
B
204 221Right-handed alpha
Helix 32
32
B
235 242Right-handed alpha
Helix 33
33
B
247 252Right-handed alpha
Helix 34
34
B
257 274Right-handed alpha
Helix 35
35
B
302 312Right-handed alpha
Helix 36
36
B
313 317Right-handed 310
Helix 37
37
B
325 332Right-handed alpha
Helix 38
38
B
333 335Right-handed 310
Helix 39
39
B
336 349Right-handed alpha
Helix 40
40
B
366 382Right-handed alpha
Helix 41
41
B
398 410Right-handed alpha
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There are 14 sheets in PDB entry 2YJQ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, BA, BB, BC, BD, BE, BF, BG,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 22first strand
Strand 2
A
421 427anti-parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
488 493first strand
Strand 2
A
474 481anti-parallel
Strand 3
A
509 516anti-parallel
Strand 4
A
446 453anti-parallel
Strand 5
A
433 439anti-parallel
Strand 6
A
421 427anti-parallel
Strand 7
A
21 22anti-parallel
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There are 9 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
488 493first strand
Strand 2
A
474 481anti-parallel
Strand 3
A
509 516anti-parallel
Strand 4
A
446 453anti-parallel
Strand 5
A
433 439anti-parallel
Strand 6
A
421 427anti-parallel
Strand 7
A
9 15anti-parallel
Strand 8
A
460 467parallel
Strand 9
A
500 505anti-parallel
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There are 9 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 30first strand
Strand 2
A
42 45parallel
Strand 3
A
105 110parallel
Strand 4
A
181 184parallel
Strand 5
A
227 233parallel
Strand 6
A
280 285parallel
Strand 7
A
353 359parallel
Strand 8
A
387 390parallel
Strand 9
A
29 30parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
69 71anti-parallel
Strand 3
A
122 123anti-parallel
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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 117first strand
Strand 2
A
135 139anti-parallel
Strand 3
A
156 158parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 291first strand
Strand 2
A
294 295anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 22first strand
Strand 2
B
421 427anti-parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
488 489first strand
Strand 2
B
475 480anti-parallel
Strand 3
B
509 515anti-parallel
Strand 4
B
447 453anti-parallel
Strand 5
B
433 439anti-parallel
Strand 6
B
421 427anti-parallel
Strand 7
B
21 22anti-parallel
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There are 9 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
488 489first strand
Strand 2
B
475 480anti-parallel
Strand 3
B
509 515anti-parallel
Strand 4
B
447 453anti-parallel
Strand 5
B
433 439anti-parallel
Strand 6
B
421 427anti-parallel
Strand 7
B
9 15anti-parallel
Strand 8
B
460 467parallel
Strand 9
B
500 505anti-parallel
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There are 9 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 30first strand
Strand 2
B
42 45parallel
Strand 3
B
105 110parallel
Strand 4
B
181 184parallel
Strand 5
B
227 233parallel
Strand 6
B
280 285parallel
Strand 7
B
353 359parallel
Strand 8
B
387 390parallel
Strand 9
B
29 30parallel
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There are 3 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 61first strand
Strand 2
B
69 71anti-parallel
Strand 3
B
122 123anti-parallel
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There are 3 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 117first strand
Strand 2
B
135 139anti-parallel
Strand 3
B
156 158parallel
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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
290 291first strand
Strand 2
B
294 295anti-parallel
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