Analysis of interatomic Contacts of Structural Units in PDB entry:
2YJT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YJT entry

There are 4 chains in PDB entry 2YJT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2ASP 159
B
 LYS 2ASP 159
C
 LYS 2ASP 159
D
 ARG 219GLU 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 2YJT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 13Right-handed alpha
Helix 2
2
A
14 16Right-handed 310
Helix 3
3
A
45 52Right-handed alpha
Helix 4
4
A
75 85Right-handed alpha
Helix 5
5
A
98 104Right-handed alpha
Helix 6
6
B
4 13Right-handed alpha
Helix 7
7
B
14 16Right-handed 310
Helix 8
8
B
45 53Right-handed alpha
Helix 9
9
B
75 85Right-handed alpha
Helix 10
10
B
98 104Right-handed alpha
Helix 11
11
C
4 13Right-handed alpha
Helix 12
12
C
14 16Right-handed 310
Helix 13
13
C
45 53Right-handed alpha
Helix 14
14
C
75 85Right-handed alpha
Helix 15
15
C
98 103Right-handed alpha
Helix 16
16
D
231 244Right-handed alpha
Helix 17
17
D
258 273Right-handed alpha
Helix 18
18
D
283 295Right-handed alpha
Helix 19
19
D
306 310Right-handed 310
Helix 20
20
D
328 336Right-handed alpha
Helix 21
21
D
337 339Right-handed 310
Helix 22
22
D
356 367Right-handed alpha
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There are 16 sheets in PDB entry 2YJT. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE, CA, CB, CC, CD, CE, A,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 18first strand
Strand 2
A
151 154anti-parallel
Strand 3
A
143 146anti-parallel
Strand 4
A
32 40anti-parallel
Strand 5
A
126 127anti-parallel
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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 18first strand
Strand 2
A
151 154anti-parallel
Strand 3
A
143 146anti-parallel
Strand 4
A
32 40anti-parallel
Strand 5
A
59 64parallel
Strand 6
A
89 96parallel
Strand 7
A
108 114anti-parallel
Strand 8
A
24 25parallel
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There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 18first strand
Strand 2
A
151 154anti-parallel
Strand 3
A
143 146anti-parallel
Strand 4
A
32 40anti-parallel
Strand 5
A
59 64parallel
Strand 6
A
89 96parallel
Strand 7
A
72 74parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 127first strand
Strand 2
A
32 40anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 133first strand
Strand 2
A
136 138anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 18first strand
Strand 2
B
151 154anti-parallel
Strand 3
B
143 146anti-parallel
Strand 4
B
32 40anti-parallel
Strand 5
B
126 127parallel
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There are 8 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 18first strand
Strand 2
B
151 154anti-parallel
Strand 3
B
143 146anti-parallel
Strand 4
B
32 40anti-parallel
Strand 5
B
59 64parallel
Strand 6
B
89 93parallel
Strand 7
B
109 111parallel
Strand 8
B
24 25anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 127first strand
Strand 2
B
32 40parallel
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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 74first strand
Strand 2
B
95 96parallel
Strand 3
B
113 114parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 133first strand
Strand 2
B
136 138anti-parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 18first strand
Strand 2
C
151 154parallel
Strand 3
C
143 146anti-parallel
Strand 4
C
32 41parallel
Strand 5
C
125 127anti-parallel
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There are 8 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 18first strand
Strand 2
C
151 154parallel
Strand 3
C
143 146anti-parallel
Strand 4
C
32 41parallel
Strand 5
C
59 64parallel
Strand 6
C
89 93parallel
Strand 7
C
108 111parallel
Strand 8
C
24 25anti-parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
125 127first strand
Strand 2
C
32 41anti-parallel
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There are 3 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
72 74first strand
Strand 2
C
95 96parallel
Strand 3
C
113 114parallel
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There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
131 133first strand
Strand 2
C
136 138anti-parallel
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There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
276 278first strand
Strand 2
D
301 304parallel
Strand 3
D
251 254parallel
Strand 4
D
319 322parallel
Strand 5
D
347 353parallel
Strand 6
D
223 229parallel
Strand 7
D
372 373parallel
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