Analysis of interatomic Contacts of Structural Units in PDB entry:
2YJY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YJY entry

There are 4 chains in PDB entry 2YJY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 828LEU 1164
B
 GLY 828TYR 1168
C
 A -1 A 8
D
 A -1 A 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 2YJY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
32
A
830 838Right-handed alpha
Helix 2
33
A
845 850Right-handed 310
Helix 3
34
A
852 858Right-handed alpha
Helix 4
35
A
859 871Right-handed alpha
Helix 5
36
A
874 887Right-handed alpha
Helix 6
37
A
888 894Right-handed alpha
Helix 7
38
A
897 909Right-handed alpha
Helix 8
39
A
910 922Right-handed alpha
Helix 9
40
A
924 930Right-handed alpha
Helix 10
41
A
933 945Right-handed alpha
Helix 11
42
A
946 956Right-handed alpha
Helix 12
43
A
960 966Right-handed alpha
Helix 13
44
A
969 981Right-handed alpha
Helix 14
45
A
982 985Right-handed 310
Helix 15
46
A
986 993Right-handed alpha
Helix 16
47
A
996 1002Right-handed alpha
Helix 17
48
A
1005 1017Right-handed alpha
Helix 18
49
A
1018 1037Right-handed alpha
Helix 19
50
A
1039 1053Right-handed alpha
Helix 20
51
A
1054 1066Right-handed alpha
Helix 21
52
A
1068 1074Right-handed alpha
Helix 22
53
A
1077 1089Right-handed alpha
Helix 23
54
A
1090 1103Right-handed alpha
Helix 24
55
A
1111 1118Right-handed alpha
Helix 25
56
A
1120 1132Right-handed alpha
Helix 26
57
A
1133 1143Right-handed alpha
Helix 27
58
A
1144 1153Right-handed alpha
Helix 28
59
A
1157 1163Right-handed alpha
Helix 29
1
B
830 838Right-handed alpha
Helix 30
2
B
846 850Right-handed 310
Helix 31
3
B
852 858Right-handed alpha
Helix 32
4
B
859 873Right-handed alpha
Helix 33
5
B
874 888Right-handed alpha
Helix 34
6
B
888 894Right-handed alpha
Helix 35
7
B
897 908Right-handed alpha
Helix 36
8
B
910 922Right-handed alpha
Helix 37
9
B
924 930Right-handed alpha
Helix 38
10
B
933 945Right-handed alpha
Helix 39
11
B
946 956Right-handed alpha
Helix 40
12
B
960 966Right-handed alpha
Helix 41
13
B
969 981Right-handed alpha
Helix 42
14
B
982 985Right-handed 310
Helix 43
15
B
986 994Right-handed alpha
Helix 44
16
B
996 1002Right-handed alpha
Helix 45
17
B
1005 1017Right-handed alpha
Helix 46
18
B
1018 1031Right-handed alpha
Helix 47
19
B
1032 1037Right-handed alpha
Helix 48
20
B
1041 1053Right-handed alpha
Helix 49
21
B
1054 1066Right-handed alpha
Helix 50
22
B
1068 1074Right-handed alpha
Helix 51
23
B
1075 1089Right-handed alpha
Helix 52
24
B
1090 1104Right-handed alpha
Helix 53
25
B
1111 1116Right-handed alpha
Helix 54
26
B
1120 1132Right-handed alpha
Helix 55
27
B
1133 1145Right-handed alpha
Helix 56
28
B
1147 1153Right-handed alpha
Helix 57
29
B
1154 1156Right-handed 310
Helix 58
30
B
1157 1163Right-handed alpha
Helix 59
31
B
1164 1168Right-handed 310
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There are 2 sheets in PDB entry 2YJY. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1105 1106first strand
Strand 2
B
1109 1110anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1105 1106first strand
Strand 2
A
1109 1110anti-parallel
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