Analysis of interatomic Contacts of Structural Units in PDB entry:
2YJZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YJZ entry

There are 4 chains in PDB entry 2YJZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 19GLN 195
B
 GLN 19GLN 195
C
 GLN 19GLN 195
D
 GLN 19GLN 195
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 2YJZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 41Right-handed alpha
Helix 2
2
A
67 73Right-handed alpha
Helix 3
3
A
82 86Right-handed 310
Helix 4
4
A
86 97Right-handed 310
Helix 5
5
A
116 125Right-handed alpha
Helix 6
6
A
140 145Right-handed alpha
Helix 7
7
A
159 173Right-handed alpha
Helix 8
8
A
182 184Right-handed 310
Helix 9
9
A
185 192Right-handed alpha
Helix 10
10
A
193 195Right-handed 310
Helix 11
11
B
28 41Right-handed alpha
Helix 12
12
B
67 71Right-handed alpha
Helix 13
13
B
72 74Right-handed 310
Helix 14
14
B
82 87Right-handed 310
Helix 15
15
B
88 93Right-handed alpha
Helix 16
16
B
94 97Right-handed 310
Helix 17
17
B
116 125Right-handed alpha
Helix 18
18
B
140 145Right-handed alpha
Helix 19
19
B
159 173Right-handed alpha
Helix 20
20
B
182 184Right-handed 310
Helix 21
21
B
185 192Right-handed alpha
Helix 22
22
B
193 195Right-handed 310
Helix 23
23
C
28 41Right-handed alpha
Helix 24
24
C
67 73Right-handed alpha
Helix 25
25
C
82 97Right-handed 310
Helix 26
26
C
116 125Right-handed alpha
Helix 27
27
C
140 145Right-handed alpha
Helix 28
28
C
159 173Right-handed alpha
Helix 29
29
C
182 184Right-handed 310
Helix 30
30
C
185 192Right-handed alpha
Helix 31
31
C
193 195Right-handed 310
Helix 32
32
D
28 41Right-handed alpha
Helix 33
33
D
67 73Right-handed alpha
Helix 34
34
D
82 97Right-handed 310
Helix 35
35
D
116 125Right-handed alpha
Helix 36
36
D
140 145Right-handed alpha
Helix 37
37
D
159 173Right-handed alpha
Helix 38
38
D
182 184Right-handed 310
Helix 39
39
D
185 192Right-handed alpha
Helix 40
40
D
193 195Right-handed 310
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There are 4 sheets in PDB entry 2YJZ. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 66first strand
Strand 2
A
44 49parallel
Strand 3
A
21 25parallel
Strand 4
A
76 79parallel
Strand 5
A
100 103parallel
Strand 6
A
129 132parallel
Strand 7
A
152 157anti-parallel
Strand 8
A
176 179parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 66first strand
Strand 2
B
44 49parallel
Strand 3
B
21 25parallel
Strand 4
B
76 79parallel
Strand 5
B
100 103parallel
Strand 6
B
129 132parallel
Strand 7
B
152 157anti-parallel
Strand 8
B
176 179parallel
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There are 8 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
63 66first strand
Strand 2
C
44 49parallel
Strand 3
C
21 25parallel
Strand 4
C
76 79parallel
Strand 5
C
100 103parallel
Strand 6
C
129 132parallel
Strand 7
C
152 157anti-parallel
Strand 8
C
176 179parallel
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There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
63 66first strand
Strand 2
D
44 49parallel
Strand 3
D
21 25parallel
Strand 4
D
76 79parallel
Strand 5
D
100 103parallel
Strand 6
D
129 132parallel
Strand 7
D
152 157anti-parallel
Strand 8
D
176 179parallel
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